Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00495 ATGGCTACCTCCAAATTAAAACCGAAAGCCCTACCTTCTCTGTGTAAGCTATTTCTGTTTTTGTGTCTCGCGTGCACCGCCATTGCCGACGATGGCGCGTTCATGTCGAAGCTGGCGAAGGCTTTGAGCCCAACGCCGTCGGGGTGGTCCGGGAGCAGCTTCTGCGACTGGAAGGGCGTGAAGTGCAGCTCCAACCGCGTGACCTCAATCAACATCGCTTCCCAGTCACTCAGCGGAACGCTCCCTCCGGATCTGAACACGCTCTCCCAACTCACCTCGCTCTCTCTCCAGAACAACGCCCTCTCCGGCGCGTTGCCTACACTCGCCAACCTCTCCATGCTCGAAACCGTGTTCCTCGACACCAACAACTTCACCTCCGTCCCCGACGGTTGCTTCCAGGGGCTCACCAGTCTACAAACCCTCAGCATGACCGACAGCATCAACCTCGCGCCCTGGGCGTTTCCCACCGAGTTGACTCAGTCCTCCAACCTCGTCAAACTCGAACTCGGTAACGCAAACCTCATCGGTACCTTGCCTGATGCATTCAACCAGTTCGTGAGTTTGCAGGAGCTTCGTCTCTCTTACAACAACCTCACCGGGGGTTTACCTAAGACCTTCGCAGGATCTGGGATTCAGAATCTGTGGCTCAACAATCAGAAAGACGGGTTCGGGTTTTCGGGTACCATTGAGGTGCTTGCTTCCATGACCCGCTTGTCTCAAGTGTGGCTTCACAAGAACCTGTTTACGGGCCCCATTCCCGATTTGTCAAATTGCACCACTCTGTTTGATCTGCAGCTGAGGGACAACCAGTTTACTGGTGTGGTTCCACCTTCTTTGATGTCTCTTTCTAGCCTTCAGAACGTTTCTCTGGACAACAACTTGCTTCAGGGTCCTGTTCCTTCGTTTGGGAAAGGTGTCAAGGTCACTCTCGATGGAATCAATAGTTTTTGTCTGAAAGATGTTGGACCCTGCGATTCTCGTGTCACCACTTTGCTTGATATTGCTAAGGATTTCGGGTATCCCCCTCAGTTGGCGCGTTCCTGGACCGGGAACGATCCTTGTGACAATTGGAGTTTCATTGTGTGTGCTGAGGGGAAGATTATTACGGTGAATTTGGCGAAGCAGAATTTGACGGGAACCATTTCACCTGCGTTTGCTAATTTAATTGATTTGAGGAGCTTGTTTCTCAATAATAATCATTTGAGTGGTTCAATACCGGGGAGTTTGACAAATTTGGCTCAGCTTGAGGTTCTGGATGTGTCTAATAACAACCTATCTGGTGATGTTCCAAAGTTCTCAAGCAAGGTGAAGTTCACCACTGCAGGTAATGATTTACTTGGGCGTTCTGATGGTGGTGGCGGCGGTGGAACTACTCCGTCGAAGGGTTCCGGTGATGCACCGAGTGGAAGTCCGAGCACGGCGTCAAGTGGATCTTCACTTTCACCTGCTTGGGTCGCAGGTATTGTTGTTATTGCTGTGTTTTTTGTTGCGGTGGTGGTGTTTGTGTTTTGCAAGTGTCATGCTAAAAACCGGCATGGGAAGTTTGGAAGGGTTAATAATCCGGAAAATGGGAAAGGAGAGGTAAAGATTGATATGATGAGCGTTACCAATTCCAATGGATATGGTGGTGTTCCGAGTGAGTTGCAAAGCCAGGGCAGTGAGCGTAGTGACGCTCATGTTTTTGAGGGTGGGAATGCTACTATTTCAATCCAGGTTCTTCGGCAAGTAACGGATAATTTCAGTGAGAATAACATTTTGGGTAGGGGAGGATTTGGGGTTGTTTATAAAGGGCAATTGCATGATGGAACTCAGATTGCTGTGAAGAGGATGGAATCTGTTGCAACGGGGAGTAAGGGATTGAATGAGTTCCAAGCAGAGATTGCAGTTCTCAGTAAAGTCAGGCACAGGCATTTGGTGGCTCTTTTAGGTTATTGCATTAACGGCAACGAAAGGCTTTTGGTGTACGAGTATATGCCTCAAGGGACACTAACGCAACATTTGTTCGATTGGCGTGATAATGGCTGTGCTCCTTTGACTTGGAAACAAAGGGTAGCGATAGCTTTGGATGTGGCACGGGGAGTGGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGGGACTTAAAACCCTCAAACATATTATTGGGTGATGACATGAGAGCCAAGGTTGCGGATTTTGGTTTGGTTAAAAATGCGCCAGATGGGAAGTATTCTGTCGAGACACGCTTGGCTGGAACATTTGGATATCTGGCACCTGAATATGCAGCTACTGGAAGAGTGACGACCAAAGTAGATGTGTACGCATTTGGAGTAGTTTTAATGGAACTGATTACCGGTAGAAGGGCATTGGACGATACCGTGCCTGATGAAAGGTCTCACTTGGTTTCCTGGTTCCGTAGGGTACTAATTAACAAGGAGAACATCCCAAAGGCAATTGATCAAACTCTCGATCCCGATGAGGAAACCATGGAAAGCATATATAAAGTGGCTGAGCTAGCAGGGCATTGCACTGCTCGTGAACCATACCAAAGGCCAGATATGGGGCATGCAGTGAATGTCTTGGTTCCTCTGGTAGAGCAATGGAAGCCTACCACCCATGAAGAAGAAGAAGGTTGTGGCATTGACCTTCACATGAGCCTTCCTCAAGCTCTACGAAGATGGCAAGCCAATGAAGGCACTTCCACAATGTTTGACATGTCCATCTCACAAACTCAATCAAGCATTCCCGCAAAACCTTCAGGATTTGCAGACTCCTTTGATTCAATGGATTGCCGGTGA 2784 0.4864 MATSKLKPKALPSLCKLFLFLCLACTAIADDGAFMSKLAKALSPTPSGWSGSSFCDWKGVKCSSNRVTSINIASQSLSGTLPPDLNTLSQLTSLSLQNNALSGALPTLANLSMLETVFLDTNNFTSVPDGCFQGLTSLQTLSMTDSINLAPWAFPTELTQSSNLVKLELGNANLIGTLPDAFNQFVSLQELRLSYNNLTGGLPKTFAGSGIQNLWLNNQKDGFGFSGTIEVLASMTRLSQVWLHKNLFTGPIPDLSNCTTLFDLQLRDNQFTGVVPPSLMSLSSLQNVSLDNNLLQGPVPSFGKGVKVTLDGINSFCLKDVGPCDSRVTTLLDIAKDFGYPPQLARSWTGNDPCDNWSFIVCAEGKIITVNLAKQNLTGTISPAFANLIDLRSLFLNNNHLSGSIPGSLTNLAQLEVLDVSNNNLSGDVPKFSSKVKFTTAGNDLLGRSDGGGGGGTTPSKGSGDAPSGSPSTASSGSSLSPAWVAGIVVIAVFFVAVVVFVFCKCHAKNRHGKFGRVNNPENGKGEVKIDMMSVTNSNGYGGVPSELQSQGSERSDAHVFEGGNATISIQVLRQVTDNFSENNILGRGGFGVVYKGQLHDGTQIAVKRMESVATGSKGLNEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFDWRDNGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTVPDERSHLVSWFRRVLINKENIPKAIDQTLDPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTTHEEEEGCGIDLHMSLPQALRRWQANEGTSTMFDMSISQTQSSIPAKPSGFADSFDSMDCR 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00495 927 Pfam Leucine rich repeat N-terminal domain 32 63 IPR013210 -
Pumo1g00495 927 Pfam Leucine rich repeat N-terminal domain 328 362 IPR013210 -
Pumo1g00495 927 MobiDBLite consensus disorder prediction 461 476 - -
Pumo1g00495 927 Pfam Leucine Rich Repeat 187 207 IPR001611 GO:0005515
Pumo1g00495 927 FunFam Receptor-like kinase TMK4 29 322 - -
Pumo1g00495 927 SUPERFAMILY L domain-like 35 434 - -
Pumo1g00495 927 FunFam receptor protein kinase TMK1 543 657 - -
Pumo1g00495 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672|GO:0006468
Pumo1g00495 927 CDD STKc_IRAK 586 859 - -
Pumo1g00495 927 SMART serkin_6 580 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00495 927 Gene3D Transferase(Phosphotransferase) domain 1 658 879 - -
Pumo1g00495 927 Gene3D Ribonuclease Inhibitor 32 321 IPR032675 -
Pumo1g00495 927 Pfam Leucine rich repeat 370 425 IPR001611 GO:0005515
Pumo1g00495 927 SMART LRR_typ_2 88 110 IPR003591 -
Pumo1g00495 927 SMART LRR_typ_2 412 434 IPR003591 -
Pumo1g00495 927 SMART LRR_typ_2 388 411 IPR003591 -
Pumo1g00495 927 SMART LRR_typ_2 185 208 IPR003591 -
Pumo1g00495 927 SMART LRR_typ_2 111 134 IPR003591 -
Pumo1g00495 927 SUPERFAMILY Protein kinase-like (PK-like) 559 856 IPR011009 -
Pumo1g00495 927 PANTHER OSJNBA0070M12.3 PROTEIN 17 927 - -
Pumo1g00495 927 FunFam Leucine-rich repeat receptor-like kinase 326 449 - -
Pumo1g00495 927 MobiDBLite consensus disorder prediction 443 476 - -
Pumo1g00495 927 ProSitePatterns Protein kinases ATP-binding region signature. 586 608 IPR017441 GO:0005524
Pumo1g00495 927 Gene3D Phosphorylase Kinase; domain 1 544 657 - -
Pumo1g00495 927 Gene3D Ribonuclease Inhibitor 325 450 IPR032675 -
Pumo1g00495 927 Pfam Protein tyrosine and serine/threonine kinase 583 854 IPR001245 GO:0004672|GO:0006468
Pumo1g00495 927 ProSiteProfiles Protein kinase domain profile. 580 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00495 927 MobiDBLite consensus disorder prediction 905 927 - -
Pumo1g00495 927 FunFam receptor protein kinase TMK1 658 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00495 Pumo-Chr1 6551933 6555553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00495 67 856 Receptor kinase-like Gene Family AT5G07280 32.103 6.85e-93 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Pumo1g00495 PK_Tyr_Ser-Thr 7.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00495 - - gmx:100783655 1591.25