Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00487 ATGGTTTCCTTTAAAAATTATTTGATTTATAAAAGAACAGACAATCCATTGCATATCCTCAAATTTCGTAGCATCTTCTTTGTCCCACTGGAAGCTACAAGTTGGCAAACATATGGTAGCTTGAGATATTGTCATTCTGGGTCAGAACGGGGTAAAAATCTGAAATTGACACCAAACGAGAAGCCAAACAGGGTGGGGCTTTTCTGGGACTTGGACAATAAACCACCCAACTCAATCCCACCTTATGAAGTTGCCAATAAGCTGAGAATAGCTGCATCCTCCTTTGGGGTTGTTCGTTATATGGTAGCTTATGCAAATAGCCACACTTTTAGCCATGTCCCTGACTGTGTCCGGGAGAGTAGGAAAGAGAAGGAACTGCTGTATCGTTTAGAGAATAAGGGTGTCATCAAGCCAAATCAACCTTATCGTTGTAAGGTTTGTGGGAGAAAGTTTTATACTAATGACAAGCTTGTTAACCATTTCAAGCAACTGCATGAGCGTGAACACGCGAAAAGGATGAACCAGATTGATTCTGCTAGGGGGAGCAGGAAGGTGAAGTTGGTGGCTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGATATTCTCACTCCCAAAGTGGGGTATGGTTTGGCGGATGAGCTCAAACGGGCTGGGTTTTGGGTTCGAACTGTGTTGGATAAGCCACAAGCTGCAGATCGAGCATTGCAAAGCCACATGGTGGATATCATGGATCATAAGCGGGTTGAGTGTGTGGTCCTTGTGTCTGATGATTCTGATTTTGTTGATGTGATAAAGGAAGCAAAGATGCGATGTCTGAAGACGGTTGTCATTGGGGATATTGATGATGGTTTCTTGAAGAGGACTGCTGATACTGCATTTTCTTGGGAGGAAATTCTGATGGGGAAAGCTAAAAAGCAGGCTGTTTCGGTTGTGAAAAACTGGAAGGATCGCGATATCTTAAAAAGGTTGGAGTGGACATACAACCCTGATGAGGATAAAAATAATTTCATTCTGGATGATACTGTTACTGAAGCATCTGAAGATGATAATATTGAAGATACCTGTGATGAAGTTGATGATGCCTATAAGGATGACAGAGGTTCTTGGTGGGAATTAGATTCTGATGATGATGTCACAAATGGACAGTCAGGCAAATTATCTGGTTTATCTGTGAATACGTGA 1194 0.4171 MVSFKNYLIYKRTDNPLHILKFRSIFFVPLEATSWQTYGSLRYCHSGSERGKNLKLTPNEKPNRVGLFWDLDNKPPNSIPPYEVANKLRIAASSFGVVRYMVAYANSHTFSHVPDCVRESRKEKELLYRLENKGVIKPNQPYRCKVCGRKFYTNDKLVNHFKQLHEREHAKRMNQIDSARGSRKVKLVAKYSMKMEKYKKAASDILTPKVGYGLADELKRAGFWVRTVLDKPQAADRALQSHMVDIMDHKRVECVVLVSDDSDFVDVIKEAKMRCLKTVVIGDIDDGFLKRTADTAFSWEEILMGKAKKQAVSVVKNWKDRDILKRLEWTYNPDEDKNNFILDDTVTEASEDDNIEDTCDEVDDAYKDDRGSWWELDSDDDVTNGQSGKLSGLSVNT 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00487 397 MobiDBLite consensus disorder prediction 377 397 - -
Pumo1g00487 397 SUPERFAMILY beta-beta-alpha zinc fingers 138 168 IPR036236 -
Pumo1g00487 397 Gene3D Classic Zinc Finger 119 204 - -
Pumo1g00487 397 SMART c2h2final6 142 165 IPR013087 -
Pumo1g00487 397 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 57 383 - -
Pumo1g00487 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
Pumo1g00487 397 Pfam NYN domain 214 282 IPR021139 GO:0004540
Pumo1g00487 397 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Pumo1g00487 397 CDD PIN_LabA-like 152 283 - -
Pumo1g00487 397 MobiDBLite consensus disorder prediction 379 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00487 Pumo-Chr1 6449706 6450899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00487 59 387 C2H2 Transcription Factor Family AT4G12240 58.235 4.25e-141 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo1g00487 NYN 5.2e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00487 - - gmx:100785257 723.391