Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00469 ATGCCACCTGGTTTGGAGTACAACATCGATGATCTGTTTCAAGAAGCTAAGAGGAGATGGCTCAAGCCTGTGGAAGTGCTTTACATTTTACGGAATCACGACAAGTGCGAGTTCACCCACCAGCCCCCTCATCAGCCAGCTGGTGGATCCCTGTTTCTGTTTAATCGAAGAGTCATGCGTTTCTTCCGTAAAGATGGTCATAACTGGCGGAAGAAAAAAGATGGCAGAACTGTGGGAGAAGCGCATGAACGGCTTAAGGTTGGCAATGTTGAAATCCTAAACTGTTACTATGCACATGGAGAGGAGAACCGTACTTTTCAAAGACGGAGCTATTGGATGTTGGAGCCGGAATATGAGCATATTGTTCTTGTGCATTATAGAGAAACAAGTGAGGGGAAATCCAATTCTGAACATGTCACACAATTGTCATCAGGTTCCTCTCCTGTTTTCAGTCAGAGTCATAGCTCGTATACTGCTCACAACCCAGGAACAGCATCCATGTTTGGTGATTCATGTGAACCTAATCAGAATTTTTCTAGTCCTGGGTCTTTAGAAGTTACGTCCGAAGCACAAGCCTTGCGCCAATTGGAAGAACAGCTGAGTTTGAATGAGGACAGCTTCAATGAAATTGCACTTGATTTAATCCCATGTCAAGATCAAAGGGTGGTTTATAAGCAAGATAACTCTGCAGCTTTGTCTGGACCAAATGATCAAGGACAACCTTGTATTGGATATAATGGAAGACAAGATGACAGTGGCACATATTATCATGACTTACTTGATGACTGTCCTGGTGGAAATGAAAAAACTATATACTGGACGGAAATGCTGGAATCGTGTAAGCCCTTATCTGTGACCAAATTACCAGATCAACATGCATATGAGGCGATTGAAAATGAAAAGTCATTATTTTCTTCAGGAAGGGGAATGATTGCCAACCTGGAAAACAATCAGTGGCTAAACTCCAACAGTAATAATGTTGAAAACTCTGTTTTCTTGTTTCCTCAAGATGGTGGAGTCAAATTTCCTCCATATTCTCTGGTAGAAACTCCAGGAACTAACTCTAACTACTATGAAACATTTTTTGACCAAATCCAAAATCAAGAACCTCTGGGTGTAGATTCAAGCTTGACTGTTGTGCAGAAACAGAAATTTACAATTAGGGCAGTTTCCCCAGAATACTGTTATGCCACTGAGACTACAAAGGTGATCATTATTGGGTCATTTCTCTGCCATGACTCGGATTCTACTTGGGCCTGTATGTTTGGTGATGTTGAAGTTCCTGCAGAGATAATTCAGGATGGCGTAATCTGTTGTGAAGCTCCATCTGATCTTCTTGGAAAGGTTAATTTGTGCATTACTTCAGGAAATAGGGTGCCATGCAGTGAAGTGAGAGAGTTTGAGTTTCGAAATAAGACTACTAGTTACACTCACTGTAATTCATTGGAAACAGAAGGCATTAGAAGTCCAGAAGATCTGTTATTACTTGTTCGATTTGCAGAGATGCTCCTTTCTGCTTCAACTACAAAGGATGACAGAATAGAATCTGGAAGTCATCTTTCAACAGAACAGAAAGATGATGATGATTCATGTAGCCATATTATAGACACTCTTCTAGATGGCACCAGAACATCATCTTATACTGTTAACTGCCTTCTTGAAGAGCTGCTGAAGGATAAGTTGCAGCTCTGGCTTTCTAACCGAAGAGATGAAGGGACAGGCTGTTCTTTGTCCAAGAAAGAGCAGGGGATTATACACATGGTTTCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCCATTCTCAGTTCTGGTGTGAATATAAATTTCCGTGACATCAATGGATGGACCGCTCTTCATTGGGCTGCACGGTTTGGGAGGTAA 1881 0.4179 MPPGLEYNIDDLFQEAKRRWLKPVEVLYILRNHDKCEFTHQPPHQPAGGSLFLFNRRVMRFFRKDGHNWRKKKDGRTVGEAHERLKVGNVEILNCYYAHGEENRTFQRRSYWMLEPEYEHIVLVHYRETSEGKSNSEHVTQLSSGSSPVFSQSHSSYTAHNPGTASMFGDSCEPNQNFSSPGSLEVTSEAQALRQLEEQLSLNEDSFNEIALDLIPCQDQRVVYKQDNSAALSGPNDQGQPCIGYNGRQDDSGTYYHDLLDDCPGGNEKTIYWTEMLESCKPLSVTKLPDQHAYEAIENEKSLFSSGRGMIANLENNQWLNSNSNNVENSVFLFPQDGGVKFPPYSLVETPGTNSNYYETFFDQIQNQEPLGVDSSLTVVQKQKFTIRAVSPEYCYATETTKVIIIGSFLCHDSDSTWACMFGDVEVPAEIIQDGVICCEAPSDLLGKVNLCITSGNRVPCSEVREFEFRNKTTSYTHCNSLETEGIRSPEDLLLLVRFAEMLLSASTTKDDRIESGSHLSTEQKDDDDSCSHIIDTLLDGTRTSSYTVNCLLEELLKDKLQLWLSNRRDEGTGCSLSKKEQGIIHMVSGLGFEWALNPILSSGVNINFRDINGWTALHWAARFGR 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00469 626 SUPERFAMILY E set domains 386 470 IPR014756 -
Pumo1g00469 626 CDD IPT 386 470 - -
Pumo1g00469 626 Pfam IPT/TIG domain 386 457 IPR002909 -
Pumo1g00469 626 SUPERFAMILY Ankyrin repeat 579 625 IPR036770 -
Pumo1g00469 626 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Pumo1g00469 626 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 626 - -
Pumo1g00469 626 SMART CG_1_2 12 130 IPR005559 GO:0003677
Pumo1g00469 626 Gene3D Immunoglobulins 380 475 IPR013783 -
Pumo1g00469 626 MobiDBLite consensus disorder prediction 135 186 - -
Pumo1g00469 626 MobiDBLite consensus disorder prediction 132 186 - -
Pumo1g00469 626 FunFam Calmodulin-binding transcription activator 2 380 474 - -
Pumo1g00469 626 Gene3D - 553 626 IPR036770 -
Pumo1g00469 626 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00469 Pumo-Chr1 6314651 6321748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00469 5 625 CAMTA Transcription Factor Family AT1G67310 44.217 3.12e-172 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00469 K21596 - gmx:100791430 1156.74