Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00468 ATGGTTGCTTCACTTATAGCCTCTGGTGCATCTGCTGGAGCAGTGACAGATCCAAGTTCACAAGATCCGACCGGTAAAACTGCTGCATCTATTGCAGCCAGCCATGGCCATAAGGGACTGGCAGGTTATCTTTCAGAGGTAGACCTAACAAGCCATCTGTCATCCCTTACATTGGAAGAGAGTGAGATTTCTAGAGGATCTTCTGAGCTTGAAGCCGAGTTAACTGTCAGTAGTGTCTCTAAAGAAAATCTTGTGGCCAGTGAGGATCAGGTTTCACTAAAAGCTTCCTTGGATGCTGTTAGAAATGCAGCTCAGGCAGCTGCACGGATACAAGCTGCTTTTCGTGAACATTCTTTTAGAAAACGGAAAGAAAGAGAAGCTGCTGCCACAGGTCTAGATGGATATTGTATTGATGCAGGTAGCATTGATGATAACATTTCAGTGCTTTCTGCCATGTCAAAACTTAGTTCTCGGAGCTGTCGTGATTACAATTTGGCTGCCTTATCGATTCAGAAGAAATATCGAGGTTGGAAAGGTCGTAAAGAATTCTTAGCATTGCGCCAGAAAGTAGTTAAGATACAGGCTTGTGTGAGAGGTTACCAGGTTTGGAAGCAATACAAGCTACTATTATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTACGATGGCGGAGAAAACGAATTGGTATACGAAGTGTCCGGCAAGAAATGGAGTCAAATGAAGAAGAAAGTGATGATGAAGATTTTCTCAACGTGTTCCGGAAAGAGAAAGTACATGCAGCAATTGAAAAGGCTTTGAAGCGGGTGCTTTCCATGGTCCATTCCACCGGTGCTCGTCAGCAATATAGACGCTTGCTTTCATTGTATCGTCAAGCCAAGACTGAACGTGGCAGCACGAGTGATGAAGCACCGTTATCAACTTCGGAAGAGGATGTTTCCAATATAGAAGACGATGATTTTTATCAATTTTGTGAAACATTCTGGCCTTCCTAG 993 0.4391 MVASLIASGASAGAVTDPSSQDPTGKTAASIAASHGHKGLAGYLSEVDLTSHLSSLTLEESEISRGSSELEAELTVSSVSKENLVASEDQVSLKASLDAVRNAAQAAARIQAAFREHSFRKRKEREAAATGLDGYCIDAGSIDDNISVLSAMSKLSSRSCRDYNLAALSIQKKYRGWKGRKEFLALRQKVVKIQACVRGYQVWKQYKLLLWAVGILDKVVLRWRRKRIGIRSVRQEMESNEEESDDEDFLNVFRKEKVHAAIEKALKRVLSMVHSTGARQQYRRLLSLYRQAKTERGSTSDEAPLSTSEEDVSNIEDDDFYQFCETFWPS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00468 330 ProSiteProfiles IQ motif profile. 186 210 IPR000048 GO:0005515
Pumo1g00468 330 FunFam Calmodulin-binding transcription activator 2 162 210 - -
Pumo1g00468 330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 214 IPR027417 -
Pumo1g00468 330 Pfam IQ calmodulin-binding motif 188 207 IPR000048 GO:0005515
Pumo1g00468 330 Pfam IQ calmodulin-binding motif 166 183 IPR000048 GO:0005515
Pumo1g00468 330 ProSiteProfiles IQ motif profile. 103 131 IPR000048 GO:0005515
Pumo1g00468 330 SMART iq_5 102 124 IPR000048 GO:0005515
Pumo1g00468 330 SMART iq_5 185 207 IPR000048 GO:0005515
Pumo1g00468 330 SMART iq_5 162 184 IPR000048 GO:0005515
Pumo1g00468 330 ProSiteProfiles IQ motif profile. 163 192 IPR000048 GO:0005515
Pumo1g00468 330 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 295 - -
Pumo1g00468 330 Gene3D - 163 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00468 Pumo-Chr1 6312668 6314641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00468 1 299 CAMTA Transcription Factor Family AT1G67310 64.667 4.72e-105 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00468 K21596 - gmx:100791430 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00468 1 6312668 6314641 Pumo6g01212 6 16061671 16070940 PCT