Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00464 ATGGAGTGGAATGCAAAATCTCTCGGGCAATGGGACTGGGAGCACTTATTCTTCTTCAATACGAAAGCAGCAGAAAATCCAAGGTTACAACCAAGTGATTGCAGTGGTGAAGCTGATCGAGAAATCAATGTCGGGGTGTTGTATCCATCAGGTGGTAGTGCTTGTTCTGGCTCTGAACTAATACACGCTTCTTCATCAAGGAGCTCAAAATCAGCTTCCAACAATTCATCATCAAATGGGGATAGCAAGGCATCTATATTGACTCTGGAAGGTTCTCAGGATGATTCCACTGGGAAGAAAGAATTGTGCAATGTAGAGCCAGTTGAAACTTCTCCAGCAGCAGTGCCCTCTCCTGTTTCTGGTGAACCATTGCTCACTCTAAAGCTGGGCAAACGATTGTACTTTGAGGATGTTTGCACAGGAAGTGATTCCAAGAAACCATCTTCCTTTGAGGTTCCCATTTCATCAGGAAAGAAATATAAAACCAGTAGTCAGAATTTACAGCATCCAAGCTGCCAGGTGGAAGGATGTGGCCTTGACCTCTCATCTGCTAAAGATTACCATCGCAAACACAGAGTTTGTGAAGCTCATTCCAAATCCCCTAAGGTGGTTATAGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGTAGACGACGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCACAGCCTGACTCAATCCAATTAAATCCATCAGCTTTGTCTTCATCGCCCTATGATGGGAGGCAAATAATGAGTCCATTTGCATTTTCAAGGACTGCTACAAATTTAGCGTGGCAAGACATGCATAGCAGCAAGCTCCCCCAGACAAAAGATTTTCTCCCCAAGCCTGCAAAAACCTTCAATAAGATACCAAATATTGTCTCTATGCTTTCTGATGATTCCAGTGGCTTTCTAACATCCAGAGGCATATCAACGAAGAGTATTGTTCCAGGTTTAGAAGATCCCATTACTTCGTCTGATCCAAATGCTGCACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCTTCATGGGGTCCATATGAGACCAAGTCCCTTTCTCTGGAACACTCTACTCGGACAATTGGCATCACTCAGTCCATAACACACACAATGACTCAGCACCGCTTACCACTTCCTTCCTCAGAGTACTGGCACACTGATCAACAACAACAACCACCACCCAATTCAACCATGTGTATCTCATTCTCAGATTGTGATAGCACCAATCGCTTTCAAGACTTTCAGCTGTTGAGCTCACCCTATGAATCAGGTTTTCCTTGCAACCAACTGGATTAA 1359 0.4415 MEWNAKSLGQWDWEHLFFFNTKAAENPRLQPSDCSGEADREINVGVLYPSGGSACSGSELIHASSSRSSKSASNNSSSNGDSKASILTLEGSQDDSTGKKELCNVEPVETSPAAVPSPVSGEPLLTLKLGKRLYFEDVCTGSDSKKPSSFEVPISSGKKYKTSSQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCEAHSKSPKVVIAGLERRFCQQCSRFHALSEFDDKKRSCRRRLSDHNARRRKPQPDSIQLNPSALSSSPYDGRQIMSPFAFSRTATNLAWQDMHSSKLPQTKDFLPKPAKTFNKIPNIVSMLSDDSSGFLTSRGISTKSIVPGLEDPITSSDPNAAQDVNRALSLLSTNSSWGPYETKSLSLEHSTRTIGITQSITHTMTQHRLPLPSSEYWHTDQQQQPPPNSTMCISFSDCDSTNRFQDFQLLSSPYESGFPCNQLD 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00464 452 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Pumo1g00464 452 MobiDBLite consensus disorder prediction 65 84 - -
Pumo1g00464 452 FunFam Squamosa promoter-binding-like protein 14 163 233 - -
Pumo1g00464 452 Pfam SBP domain 172 245 IPR004333 GO:0003677
Pumo1g00464 452 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 392 IPR044817 GO:0003677
Pumo1g00464 452 SUPERFAMILY SBT domain 170 251 IPR036893 GO:0003677|GO:0005634
Pumo1g00464 452 MobiDBLite consensus disorder prediction 247 263 - -
Pumo1g00464 452 Gene3D - 162 233 IPR036893 GO:0003677|GO:0005634
Pumo1g00464 452 MobiDBLite consensus disorder prediction 236 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00464 Pumo-Chr1 6267946 6271242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00464 1 365 SBP-box Gene Family AT5G43270 40.420 7.30e-66 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo1g00464 SBP 6.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00464 - - gmx:100781289 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00464 1 6267946 6271242 Pumo1g00464 1 6267946 6271242 ECH