Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00449 ATGGCGGAGGAAGAAGAGAACGGAGTATCGATCCAACTGGAATTCCCGAAGGGTCGGGTGAAGAAGATTATGACGCTGGACAAAGACGTGAAGAGAGTGAGCTCAGAAGCGCTGTTCCTGGTGTCGCGCTCCACGGAATTATTTCTCCAATTTCTGGCTGAAAAATCAGCGCAGGTTGCAATTGAGAAGAAACGCAAGACCGTGAATCTCGAACACATAAGAGTGGCCGTGAAGAGGTACCAGCCAACCAGGGATTTTCTCCTCGATGAGCTTCCGCCGCCTTCTCAGCCCGCCAAGCCAGATAAGCCCACTCAGCCTGCTGGTCGGCCCAAATTGGATGCCCCTCCGCCTGGTACTCGCCGCATCGATCAATTCTTCCGGAAACCAGAACCTCAAAACCCAGCCCAACCGCCTGAAAATCCAGACCAAGACCAAGCCCAATCGCCAGTACCCGTAGATGAGTCTTAG 468 0.5342 MAEEEENGVSIQLEFPKGRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIRVAVKRYQPTRDFLLDELPPPSQPAKPDKPTQPAGRPKLDAPPPGTRRIDQFFRKPEPQNPAQPPENPDQDQAQSPVPVDES 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00449 155 SUPERFAMILY Histone-fold 13 81 IPR009072 GO:0046982
Pumo1g00449 155 FunFam Nuclear factor Y, subunit C13 1 92 - -
Pumo1g00449 155 Gene3D Histone, subunit A 1 92 IPR009072 GO:0046982
Pumo1g00449 155 MobiDBLite consensus disorder prediction 93 113 - -
Pumo1g00449 155 MobiDBLite consensus disorder prediction 86 155 - -
Pumo1g00449 155 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 77 IPR003958 -
Pumo1g00449 155 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 128 - -
Pumo1g00449 155 MobiDBLite consensus disorder prediction 139 155 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00449 4 128 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.800 2.64e-50 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pumo1g00449 CBFD_NFYB_HMF 1.5e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00449 - - gmx:100793004 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00449 1 6147494 6148197 Pumo1g00449 1 6147494 6148197 ECH