Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00446 ATGGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTCCTGCAAGGCTAGAGGCGCCGACCTCAGAGTGCACTTCAAGAACACTAGGGAAACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCCAAAAGATACTTGGAGGATGTTTTGGCCCACAAACAGGCCATTCCTTTCCGACGCTTCTGTGGTGGTGTTGGGAGGACAGCCCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAATTCATCCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAATCAAGCACAGAAACAAAGACGTCGCACCTACCGAGCTCACGGAAGAATCAACCCTTACATGTCATCTCCCTGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCTGTGAAGAAAGAGTCTTGTTCTGCATTCGATCATCTTAGTTCCAAGGCTAGTCCACGCTTCATCTTCCAAAATCCAAAGATGGATTGGCAAGGGCAAAAGATAGCAGAGCAGCTAATGCAGATAATGCTGCTTGCATTTGCTGTGATTGCATTCGCAACAGGATATCTTATGGCTTCTTTCCAAATGATGATCCTCATATATGCTGGTGGTGTGGTTCTCACCACATTGGTGACTGTCCCTAATTGGCCCTTCTTCAACCACCATCCTCTCAAGTGGTTGGATCCAAGTGAGTTAGAAAAGCATCCAAAGCCTCAACCATCTCTGAATGTAAATTCAAAGAAGAATTCCGTTAAGAAGTAG 831 0.4633 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKESCSAFDHLSSKASPRFIFQNPKMDWQGQKIAEQLMQIMLLAFAVIAFATGYLMASFQMMILIYAGGVVLTTLVTVPNWPFFNHHPLKWLDPSELEKHPKPQPSLNVNSKKNSVKK 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00446 276 FunFam 60S ribosomal protein L17 1 174 - -
Pumo1g00446 276 MobiDBLite consensus disorder prediction 253 276 - -
Pumo1g00446 276 Pfam Microsomal signal peptidase 12 kDa subunit (SPC12) 184 253 IPR009542 GO:0005787|GO:0006465|GO:0016020
Pumo1g00446 276 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Pumo1g00446 276 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Pumo1g00446 276 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Pumo1g00446 276 PANTHER 60S RIBOSOMAL PROTEIN L17 1 165 IPR005721 GO:0003735|GO:0006412|GO:0015934
Pumo1g00446 276 MobiDBLite consensus disorder prediction 262 276 - -
Pumo1g00446 276 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Pumo1g00446 276 Gene3D Ribosomal protein L22/L17 1 176 IPR036394 GO:0003735|GO:0005840|GO:0006412
Pumo1g00446 276 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Pumo1g00446 276 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00446 Pumo-Chr1 6128218 6133615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00446 1 161 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 91.925 1.39e-109 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00446 K02880 - gmx:100305777 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00446 1 6128218 6133615 Pumo6g01237 6 16426774 16433381 PCT