Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00441 ATGGATGTTGCCGAGGTTGAAGAAAGTCTTTTTGCAGCAAGCGATGCCAAGTTACATGGAGAAATGTGCAAGTGTCTTTCTGCAATATACTGCAAGATATTGTCATTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCAGGAATTCAGGCATTATGTTCGTTGCATGTAGCCTTAGAAAAGGCAAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTGCTAAAATTTGAGAAGGCTAAATGTGCTCTCGAGGAAAGTCTTAAACGGGTGGAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGACAAAATTGTGCAAGAACTTGCAAGTACGGTATTTGCACTTGACCCATCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGGAAGAAAGTTTAATGACTCTAATGACAGTAATGAACTTGAATGTTTTCATCTGGCTGCTACTAGACTTGGAATCACTTCTTCAAGAACAGCTCTTACAGAAAGAAGAGCTCTAAAAAAACTCATAGAAAGGGCTCGTGCTGAGGAAGACAAGCGGAAAGAATCAATTATTGCTTTTCTTTTACACCTTATGAGGAAATATTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCATTCCTGGTGGTCATTGTCATGCCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAATTTTAAGCCAAATAATAGGAAATTAGGGCAGATGCTCCTTCCACCCGAAGAGTTAAGGTGCCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAGAAATGGTTCAGAGATGGACACAACACCTGCCCAAAGACTCAACAGAAACTCTCACATCTCTGTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGATTTTAACTACTGGAGATTGGCATTATCAGATACTGAATCCACAAATTCAAGATCCATAAACAGTGTTGGCTCTTGCAAGTTGAAGGGTGTCAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGCAAACGGGGGGAAATGCAACTGAAAGCTTTTCTGCACAAGAGGAAGATAATGAACAGTATCTTAGTTTTCTTAAAGTCTTGACAGAAGGGAACAATTGGAAGAGGAAGTGTAAAGTGGTTGAACAGTTGAGGCTGTTGCTGCGGGATGACGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTATGCAGTTTCTGCAATCAGCTGTGCATGAAGGGAATGTGATGGCTCTTGAAAATGGAGCTATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAATCTTGGCGTTGTTGGAGGAAATGATTTCAAAAACTAGTTCCTATGGTTGTGCAGTTGCCCTGTATCTGAATCTTTCTTGCCTTGAAGAAGCCAAGCATGTGATTGGCCCGAGTCAGGCTGTCCAGTTCCTAATCCAGATTCTTCAAGCCAAGACAGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAACCTTTCTACTGTGCCCTCCAATATTCCAAACCTACTTTCATCTGGCATCATTGATAGCCTACAATCCCTTCTTGGAAGCCAGGGTGATTGCATGTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTGGCGGTTTCTCAAGCGGGAAGAGAGGAAATGATGTTGGCTCCTGGACTCATAAGTGCCTTGGCTTCCACGCTAGATACCGGCGAGCCCATAGAGCAGGAGCAAGCTGCCTCTTGTCTCCTAATTTTGTGTAACAGGAGTGAGGAATGTTGTGAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCGGTGAATGGGACCTCGAGAGGAAGAGAAAAGGCTCAGAAGCTCTTGATGGTCTTCCGAGAGCAACGACAACGAGACCATTCACCTGTTAAGACAGATCGATGTGAATCTGAAAGTAGTGATTTGTCTATGCCTCCTCCTGAAACGAAACCGCTATCTAAATCAATATCTAGAAGAAAGGTGGGGAAAGTTATTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2295 0.4209 MDVAEVEESLFAASDAKLHGEMCKCLSAIYCKILSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEESLKRVEDIVPQSIGCQIDKIVQELASTVFALDPSEKQVGDDLIALLQQGRKFNDSNDSNELECFHLAATRLGITSSRTALTERRALKKLIERARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGIPGGHCHAFDRQLSKLSSFNFKPNNRKLGQMLLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDFNYWRLALSDTESTNSRSINSVGSCKLKGVKVVPVEESGISEQTGGNATESFSAQEEDNEQYLSFLKVLTEGNNWKRKCKVVEQLRLLLRDDEEARIFMGANGFVEALMQFLQSAVHEGNVMALENGAMALFNLAVNNNRNKEIMISAGILALLEEMISKTSSYGCAVALYLNLSCLEEAKHVIGPSQAVQFLIQILQAKTEVQCKIDSLHALYNLSTVPSNIPNLLSSGIIDSLQSLLGSQGDCMWTEKCIAVLINLAVSQAGREEMMLAPGLISALASTLDTGEPIEQEQAASCLLILCNRSEECCEMVLQEGVIPALVSISVNGTSRGREKAQKLLMVFREQRQRDHSPVKTDRCESESSDLSMPPPETKPLSKSISRRKVGKVISFLWKSKSYSVYQC 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00441 764 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Pumo1g00441 764 SUPERFAMILY RING/U-box 279 354 - -
Pumo1g00441 764 CDD RING-Ubox_PUB 280 332 IPR045210 -
Pumo1g00441 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 352 IPR013083 -
Pumo1g00441 764 Coils Coil 175 195 - -
Pumo1g00441 764 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Pumo1g00441 764 SMART arm_5 539 580 IPR000225 GO:0005515
Pumo1g00441 764 SMART arm_5 581 622 IPR000225 GO:0005515
Pumo1g00441 764 SMART arm_5 500 538 IPR000225 GO:0005515
Pumo1g00441 764 SMART arm_5 454 498 IPR000225 GO:0005515
Pumo1g00441 764 SMART arm_5 623 664 IPR000225 GO:0005515
Pumo1g00441 764 SUPERFAMILY ARM repeat 428 701 IPR016024 -
Pumo1g00441 764 Gene3D - 422 605 IPR011989 -
Pumo1g00441 764 MobiDBLite consensus disorder prediction 707 723 - -
Pumo1g00441 764 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Pumo1g00441 764 Gene3D - 606 710 IPR011989 -
Pumo1g00441 764 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Pumo1g00441 764 MobiDBLite consensus disorder prediction 707 740 - -
Pumo1g00441 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Pumo1g00441 764 PANTHER U BOX DOMAIN-CONTAINING 21 705 - -
Pumo1g00441 764 FunFam RING-type E3 ubiquitin transferase 421 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00441 Pumo-Chr1 6054728 6059758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00441 1 763 U-box Gene Family AT1G24330 66.324 0.0 1028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00441 - - gmx:100804344 1420.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00441 1 6054728 6059758 Pumo1g00441 1 6054728 6059758 ECH
Pumo1g00441 1 6054728 6059758 Pumo6g01244 6 16521606 16526274 PCT