Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00436 ATGGCGGCTGGTAGACATAGAGGTTATCGTGACAACGAGTTTAGGGACCGTGAGTCCAATTTTGATGTTTCAAGGCGGGTTTTTAATAATAATAATAATAATAATAATAATAATTCTAAGCAAGAGTATGATAGGATTGCAAATGGTAGCCGTGATGTTGTGAGGGTTGGGAGCAAGGGTGCAAGAGATAGGATTAGACTGAGACAGAAAGATATTAGGGAGAGGGAAGCTCCAAATGGTAGTTACCGGTCATCTTCGAGTAAGAGTGACTCTGGCAGTTGTAGTAGCGGGCTTGGTTCCAGAAGATGTGGGTTTTCTGTTAAGACTATGGATAGAGAGCCAGGTGAGCTTTCCAGTGAGAGTGGGTCTGATGATGATGGTATTGAATCAGGATCACGGGAAAAATACCGTGAGGTTGCAACAGGTGAAGAAAATGGGGCACGATCTCAGCCAGAGAGGAAAAGAAAATTTTCACCAATAGTATGGGATCAGGATGACAGAGAAGTCAATAATTTATCCAAACTTAGGGTTGTCACAGCAGTGACTACTCTGCCTCCCCCACCTCCACTTCCAAGAGTCCATCTCTCACCTAATGTTCCTGACAGAGGAGTTGAAACTCATCCTGTCAATAACACAGAGGCTGAGATTCTTGAGTTACCAACTGTAACTAATCCTCCTTTGCTGTCTGAGTCAGATCAGGATGCTGAGTCTGAGTCTCCTGTAGGTTTGCATTCATTGTTGCCAGAGCAGAGATGGGGTAACGAGCAGGAAGCCAAGCAACCTGAAGGTGAAGATTATATTCCAACTCATAATATATCATCTTCAAGATGGGCAGCTGGAGATAACTCTCCTGGTGATGAAGGTGAAATCAATGATGACAAGGAAATCCTTAAGAGGAGGAAGCTATCTCCTGAGCTGGGTATGAGAGTAAGAAACAAGATGTCGAGACTGGAGGAATCTAACAGAGAAGATTTTGTAGGAGCTAGAGCCAAATCATTTGAATCTGAAGAAAGAGGTAGCCTTGGGAGATCATCCAGTGGAGATGATCATCCTGGTAATGTGTCAGGGAAGGATGATTATATGGAGATTGATGGTCAAGGTAGCAGAAGTGAAACTAGTGGTTATCATTCGGATACAGATTTGGAAGATGATAGCAGAGAAACTTCTGAACCTCGGATTCCACCACACAGAGTTGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTGAACAAGATAGATGAAGGAACATATGGTGTTGTATTTAGGGCCAAAGATAAGAAGACTGGTGAAATTGTGGCATTGAAAAAGGTGAAGATGGAGAAGGAAAAAGAAGGTTTTCCATTGACTTCTCTCAGGGAAATAAACATTCTTCTTTCCTTTCACCACCCATCCATAGTTGATGTTAAAGAAGTAGTGGTAGGAAGTAACCTTGATAGTATTTTCATGGTTATGGAATATATGGAACATGATCTTAAAGGACTAATGGAGGCAATGAAGCAGCCCTTTAGCCAGAGTGAAGTGAAATGCTTAATGCTCCAGCTTTTAGAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCATAGGGATTTGAAGACTTCGAACCTGCTTCTGAATAATAGGGGTGAGTTAAAAATTTGTGATTTTGGATTGGCTCGTCAGTATGGGAGCCCATTGAAACCATATACACACCTGGTGGTTACTCTTTGGTACAGGGCTCCTGAACTTCTTCTGGGGACAAAACAGTATTCAACAGCTATTGACATGTGGTCTTTGGGTTGTATAATGGCTGAGCTATTGTCCAAGGAACCACTGTTTAATGGGAAGACTGAATATGAACAACTTGACAAGATTTTCAGAATTCTTGGCACACCAAATGGAACAATTTGGCCTGGGTTCTCAGAATTACCTCGAGTCAAGGTCAATTTTGTCAAGAATCAGCTTCCAACTCTGGGTGGTTCTGGTCTGGCTATCTGGGCTCTCTTGGTTACTTCTACACAACTTTTTCTAGTTTATATTAACTACCAGAATGTTCCTTTCAGGTATAATCTCCTGCGTAAAAAATTTCCTGCAACATCATTCACTGGATCACCAGTTCTTTCTGATTCTGGATTTGATTTTTTGAACAAGCTTCTTACTTATGACCCTGAAAAGCGGATCTCGGCTGAAGAAGCTTTAAACCACGAGTGGTTTCATGAAGTTCCACTTCCGAAGTCTAAAGAATTTATGCCTACATTCCCTGCTCAACATGCTCAAGACAGGCGAATGAGGAGAATATTAAAGAGTCCAGATCCATTAGCTGAGCAGCGTTGGAAGGAGATGCAGCAGGGTGAATCAGGGACTGGTGGTATTTTTGGTTAA 2376 0.4209 MAAGRHRGYRDNEFRDRESNFDVSRRVFNNNNNNNNNNSKQEYDRIANGSRDVVRVGSKGARDRIRLRQKDIREREAPNGSYRSSSSKSDSGSCSSGLGSRRCGFSVKTMDREPGELSSESGSDDDGIESGSREKYREVATGEENGARSQPERKRKFSPIVWDQDDREVNNLSKLRVVTAVTTLPPPPPLPRVHLSPNVPDRGVETHPVNNTEAEILELPTVTNPPLLSESDQDAESESPVGLHSLLPEQRWGNEQEAKQPEGEDYIPTHNISSSRWAAGDNSPGDEGEINDDKEILKRRKLSPELGMRVRNKMSRLEESNREDFVGARAKSFESEERGSLGRSSSGDDHPGNVSGKDDYMEIDGQGSRSETSGYHSDTDLEDDSRETSEPRIPPHRVVNMLQGCRSVDEFERLNKIDEGTYGVVFRAKDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSIVDVKEVVVGSNLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGTKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEYEQLDKIFRILGTPNGTIWPGFSELPRVKVNFVKNQLPTLGGSGLAIWALLVTSTQLFLVYINYQNVPFRYNLLRKKFPATSFTGSPVLSDSGFDFLNKLLTYDPEKRISAEEALNHEWFHEVPLPKSKEFMPTFPAQHAQDRRMRRILKSPDPLAEQRWKEMQQGESGTGGIFG 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00436 791 SMART serkin_6 411 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00436 791 MobiDBLite consensus disorder prediction 1 23 - -
Pumo1g00436 791 MobiDBLite consensus disorder prediction 182 396 - -
Pumo1g00436 791 MobiDBLite consensus disorder prediction 375 393 - -
Pumo1g00436 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Pumo1g00436 791 MobiDBLite consensus disorder prediction 1 159 - -
Pumo1g00436 791 MobiDBLite consensus disorder prediction 56 78 - -
Pumo1g00436 791 CDD STKc_CDC2L1 405 736 IPR045267 GO:0004674|GO:0005524|GO:0006468
Pumo1g00436 791 ProSiteProfiles Protein kinase domain profile. 411 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00436 791 FunFam cyclin-dependent kinase G-2 isoform X1 396 493 - -
Pumo1g00436 791 Pfam Protein kinase domain 411 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00436 791 MobiDBLite consensus disorder prediction 287 344 - -
Pumo1g00436 791 MobiDBLite consensus disorder prediction 24 44 - -
Pumo1g00436 791 MobiDBLite consensus disorder prediction 224 238 - -
Pumo1g00436 791 MobiDBLite consensus disorder prediction 126 159 - -
Pumo1g00436 791 Gene3D Phosphorylase Kinase; domain 1 396 493 - -
Pumo1g00436 791 PANTHER CELL DIVISION PROTEIN KINASE 409 742 - -
Pumo1g00436 791 Gene3D Transferase(Phosphotransferase) domain 1 494 769 - -
Pumo1g00436 791 MobiDBLite consensus disorder prediction 79 102 - -
Pumo1g00436 791 SUPERFAMILY Protein kinase-like (PK-like) 403 742 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00436 Pumo-Chr1 6013377 6018447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00436 402 763 Core Cell Cycle Gene Families AT5G10270 42.175 1.15e-88 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Pumo1g00436 Pkinase 2.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00436 K08818 - gmx:100793729 1271.91