LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo1g00415	ATGTGGCAAAATCAGCCCAACAATTCTTCTTACAGTGATTCTGTCAAGGCTCTCGAAGATCATATACAACATGCTAATACCTTGGCATCAGCACTTCCCCGAGATTATGATGGGAACTATTTTCAGATGAAATTATCTTACAGCCCCTTTGCTCCTCTTTTCTTGTACTTGATTGAATGGTTGGATTTTAGTTGTACAGATACTTTGCCCATGTATTTGGGCTTACTCCACATACTTATTTTCAATGTATACGCTGATGGAATGCCATCTATTTCCTCAAAAGAAAGGAAAGCAACTATAAAGGAATTTTATGCTGTTATATACCCTTCGTTAAGGTTACTTCAAGGCGAGTTTAATAATAATCAAAGAAGTTGTGCAGAAGTGAGCAAAAGGAAGCTTGAAAAGGTTCTCAATAAAGATCTAGAGGTAGATGAGGAATGTGGCATATGCATGGAAAACGGCATGAAGATGGTTCTGCCTAATTGTGGACATTCTTTGTGCATTAGCTGCTTCCATGATTGGTATATGAGATCAGAATCATGCCCATTTTGCCGTGGAAGCCTGAGGAGGGTCAGTCCTAGAGATTTATGGGTGGTTATTGGCAACAGTGACGTGGTTGACAGGATTACCGTTGCAAAGGAGAATTTAAGACGTCTCTACCATTACATTGAAACTCTTCCTCCAATCATATCGGATGCACATGTATATACATTCAATTACATGCTATAA	729	0.3896	MWQNQPNNSSYSDSVKALEDHIQHANTLASALPRDYDGNYFQMKLSYSPFAPLFLYLIEWLDFSCTDTLPMYLGLLHILIFNVYADGMPSISSKERKATIKEFYAVIYPSLRLLQGEFNNNQRSCAEVSKRKLEKVLNKDLEVDEECGICMENGMKMVLPNCGHSLCISCFHDWYMRSESCPFCRGSLRRVSPRDLWVVIGNSDVVDRITVAKENLRRLYHYIETLPPIISDAHVYTFNYML	242

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo1g00415	242	Pfam	Zinc finger, C3HC4 type (RING finger)	144	190	-	-
	Pumo1g00415	242	SUPERFAMILY	RING/U-box	130	190	-	-
	Pumo1g00415	242	ProSiteProfiles	Zinc finger RING-type profile.	147	185	IPR001841	-
	Pumo1g00415	242	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	116	194	IPR013083	-
	Pumo1g00415	242	SMART	ring_2	147	184	IPR001841	-
	Pumo1g00415	242	PANTHER	RING FINGER PROTEIN 41, 151	9	238	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo1g00415	Pumo-Chr1	5847971	5849957	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo1g00415	112	224	C3H Transcription Factor Family	AT2G20030	31.746	3.32e-08	51.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo1g00415	-		-	gmx:100805014	469.159