Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00410 ATGAAAATGGAGGGGCTGGATTTTTTCCTAGTAGCAACAAATACCATAGGCTTCATTTGTGTGTGTAGTGCCCTTGTCAATTTTCTCAAGTGGGTATGGGTGATGTTCTTGAGGCCACCAAAGAATCTCAAAGAGTATGGTTCATGGGCTATAATCACTGGCTCCACTGATGGAATTGGGAAGGCCATGGCTTTTGAATTGGCATCAAAGGGACTTAACATTCTCTTGGTTGGTAGAAACCCTCTAAAACTTGAGGCAACATCCAAGGAAATAAGAGATAGACACGATGTTGAGGTCAAGTTTGTGGTCATAGACATGCAAAAGGTTGAGGGAGAGGAAATAGTAAAAAGAGTAGAGGAAGCAATAGATGGTTTGGATATAGGTTTGCTAGTTAATGGTGCAGGCTTGGCTTACCCTTATGCTAGATTCTTTCATGAGGTTGATTTGGAGCTTATGGATGCTATTATAAAAGTGAACCTGGAGGGAGCAACTTGGATCACAAAGGCAGTGCTTCCCACTATGATCAAGAAGAAAAAGGGAGCAATAGTCAACACTGGCTCTGGTTCCACTGTTGTGCTTCCTTCATACCCTCTAGTCACTCTCTATGCTGCTACAAAAGCATACCTTGCAATGTTCTCGAGATGCATCAGTTTGGAATACAAGCATCAAGGAATTGACATCCAATGCCAGGTTCCATTATTTGTGTCAACAAAGATGACGAAAATGAAGGCATCACTTTTTGTACCAACGCCGGAAATGTATAGTAAAACATGCACAAGATGGATTGGCTACGAAAAACTGGTTGTGCCATACTTCCTCCATTCTGTGCAGGGGTTTCTCATAAGGGCAATTCCTGATGCATTTGTGGATTCCTATATGCTGCGCTATTTTCTTTATTGGCGTGGAAGAGGACTCTCCAGGGACTCCAATATTAAAAAAGCATCAGCAGCATCTAATTCTTAA 963 0.4195 MKMEGLDFFLVATNTIGFICVCSALVNFLKWVWVMFLRPPKNLKEYGSWAIITGSTDGIGKAMAFELASKGLNILLVGRNPLKLEATSKEIRDRHDVEVKFVVIDMQKVEGEEIVKRVEEAIDGLDIGLLVNGAGLAYPYARFFHEVDLELMDAIIKVNLEGATWITKAVLPTMIKKKKGAIVNTGSGSTVVLPSYPLVTLYAATKAYLAMFSRCISLEYKHQGIDIQCQVPLFVSTKMTKMKASLFVPTPEMYSKTCTRWIGYEKLVVPYFLHSVQGFLIRAIPDAFVDSYMLRYFLYWRGRGLSRDSNIKKASAASNS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00410 320 PANTHER RH59310P 8 310 - -
Pumo1g00410 320 CDD 17beta-HSD1_like_SDR_c 47 285 - -
Pumo1g00410 320 PRINTS Glucose/ribitol dehydrogenase family signature 174 190 IPR002347 -
Pumo1g00410 320 PRINTS Glucose/ribitol dehydrogenase family signature 202 221 IPR002347 -
Pumo1g00410 320 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Pumo1g00410 320 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Pumo1g00410 320 PRINTS Glucose/ribitol dehydrogenase family signature 223 240 IPR002347 -
Pumo1g00410 320 Gene3D - 43 270 - -
Pumo1g00410 320 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 43 269 - -
Pumo1g00410 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 188 IPR002347 -
Pumo1g00410 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 221 IPR002347 -
Pumo1g00410 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Pumo1g00410 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 300 IPR036291 -
Pumo1g00410 320 PIRSF 11-beta-HSD1 1 307 - -
Pumo1g00410 320 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 189 217 IPR020904 GO:0016491
Pumo1g00410 320 Pfam short chain dehydrogenase 49 242 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00410 Pumo-Chr1 5802320 5805143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00410 16 309 Lipid Metabolism Gene Families AT1G67730 49.324 2.19e-109 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00410 K10251 - gmx:100816067 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00410 1 5802320 5805143 Pumo1g00410 1 5802320 5805143 ECH
Pumo6g00952 6 11774443 11777902 Pumo1g00410 1 5802320 5805143 PCT