Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00405 ATGGAAATTCCAATTCCACTCTCATTTATGTTACTCTTTCTACTTCTTGTACGTTCCTGCATTTGCTCTTCCCCACTTCAAGATCCCGAATTAGTGGTCGAAGAAGTACAAAAGAGCATTAATGCCTCAAGGAGAAACTTAGCATTTCTTTCTTGCGGGACGGGGAACCCCATTGATGATTGTTGGAGATGTGACCCGAATTGGGAAAAGAACCGGAAGCGTCTAGCAGATTGTGCCATTGGGTTTGGTAAGCATGCCATTGGAGGAAGGGATGGTAAAATATATGTGGTGACTGACCCTGGTGATCACCCTGTGAACCCGAAGCCAGGAACACTTAGATATGGTGTGATCCAAGAGGAGCCATTGTGGATCATATTCAAGCGTGACATGGTGATCAAGCTGAAGCAAGAGTTAATGATGAATTCTTTCAAAACAATTGATGGTAGAGGAGTGAGTGTGCACATTACTGGTGGCCCTTGCATTACTATACAGTATGTGACCAACATTATCATTCATGGGATTAACATCCATGACTGCAAGCAAGGAGGGAATGCCTATGTGAGGGACTCTCCTACCCACTATGGGTGGAGGACTCTCTCGGATGGTGATGGAGTGTCAATCTTTGGTGGGAGTCATGTTTGGGTGGACCACTGCTCTCTCTCCAATTGCCGTGATGGGCTAATTGATGCCATCCATGGATCCACAGCCATCACCATATCCAACAATTTCATGACCCACCATAACAAGGTCATGCTTTTGGGCCACAGTGATACTTTCACTAGGGACAAAAACATGCAAGTCACCATTGCCTTTAACCATTTTGGAGAAGGGCTAGTGCAGAGAATGCCAAGATGCAGGTTTGGATACTTTCATGTGGTGAACAATGATTACACACATTGGCAACATTACGCAATAGGTGGGAGTTCATCCCCAACTATTTTCAGCCAAGGCAATACATTTCTTGCTCCAGATGATGAAGACCACAAAGAGGTGACCAAACATTTTAAATCATCAAAGAGTGAGTGGAGGAAATGGAATTGGAGGTCTGAAGGAGATCTAATGTTGAATGGTGCCTTTTTCACACCGTCCGGAGCGGGAGCAACTGCTAGGTATGATAAAGCGTCAAGCATGGCAGCACGACCACCTATGCTTGTGCCTTCCATCACAGCAGGGGCCGGAGCGCTTACATGCAAAAATGGCCACCCATGCCTCTAA 1215 0.4576 MEIPIPLSFMLLFLLLVRSCICSSPLQDPELVVEEVQKSINASRRNLAFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKHAIGGRDGKIYVVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGVSVHITGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNFMTHHNKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRFGYFHVVNNDYTHWQHYAIGGSSSPTIFSQGNTFLAPDDEDHKEVTKHFKSSKSEWRKWNWRSEGDLMLNGAFFTPSGAGATARYDKASSMAARPPMLVPSITAGAGALTCKNGHPCL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00405 404 FunFam Pectate lyase 55 396 - -
Pumo1g00405 404 Gene3D - 55 396 IPR012334 -
Pumo1g00405 404 SMART amb_all 129 326 IPR002022 -
Pumo1g00405 404 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Pumo1g00405 404 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Pumo1g00405 404 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Pumo1g00405 404 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Pumo1g00405 404 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Pumo1g00405 404 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Pumo1g00405 404 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Pumo1g00405 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Pumo1g00405 404 SUPERFAMILY Pectin lyase-like 40 397 IPR011050 -
Pumo1g00405 404 PANTHER PECTATE LYASE 18-RELATED 28 401 IPR045032 GO:0030570
Pumo1g00405 404 Pfam Pectate lyase 137 320 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00405 Pumo-Chr1 5743404 5752949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00405 7 403 Polysaccharide Lyase AT5G63180 76.733 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00405 K01728 - gmx:100782388 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00405 1 5743404 5752949 Pumo1g00405 1 5743404 5752949 ECH
Pumo1g00405 1 5743404 5752949 Pumo4g01494 4 18901665 18903750 ECH
Pumo1g00405 1 5743404 5752949 Pumo10g01937 10 25555539 25558259 ECH