Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00400 ATGGGAGAAACCGGTATCATTGTCCGGTTCCAGGGTAGCTTAGACCCGAGAGCAGAGGAGTTCAGACCCAGCATCACCAACCCCATCATTCAATGCCAATGGTACCCTCTTCCTCTTCCTCTTCCACTTCCCTTACCCCTCCCTCTTTCCCCTGTCACTCCTCCTCCTCCACACCTCTCCACCTCCTCCACGCGCTCCCTCCTTCTCACCCCGGTCCCCCTCACCTCCGAGTCCGCCCTCCGTGCAGAACTCCAGGCCTTGGGCGACATCAGAGCCCTCCAAACCGAAGCCCTCCGCCACGGCATCCTCACCGTCCACTTCTTCGACCTCCGCCATGCAGAATCCGCCTTCGCCGCCATCCGCTCCACCTCCATGCACCTCCTCTCCGCCAGGCCCATCTCGGCCCACTACGTCCTTCCCTCCTCCAGCGCCCTCCCCGACGCCCACAACCAAGGCACCCTCGTCATCTTCAACCTGGACCCCAACCTCTCCCCCGACCACCTCCGTCGACTCTTCGAACCTTTCGGTCCCGTAAAGGAATTGAGAGATACCCCATGGAAAAGAAACCAAAGATTCGTCGAGTTCTTCGACATAAGACACGCTGCCAAGGCCTTGAAACACATGAACGGCAAGGAAATTCACGGCAAACCCGTTGTCATTGAGTTCAGTAGACCCGGTGGTCACACCCGCAAGTTCTTCCATCATTCTCCTCCCTCGCCTCCTCTCAATTTCAATCTTCCACCCTTTCCTCCTTCTCCGCAACCTCGTTTTGCTCCTCCCTCTCACAAGAAATCTTCCACCAACAAGGGTACAGGATCTGTTGATGCGTTAATGGGGTCAATGAGTTTGACCGGAGAAGTTGGAAACGGAAACGGGGTTGAAGCTGAAGACCATCATTCACATGGCCCCACACGGAGGAATCTTACCAGAAAGCACAATTGCGAGACCACACTAGTAGGAACCACCAAGCAGCAGCAGCAGCAACAGCTACCTAGAAGTAGGCACTGGAAGGGAAAACAAGCAAAGAAACATGAAACTCGGTTTCTAATCAAAGAGGACGCCATTGTAGACTCTGGTCCCAAAGATACCAGAACTACTGTCATGATCAAAAACATTCCCAACAAGTACAGTCAGAAGTTGCTATTAAACATGCTGGATAACCACTGCATACACTGCAACGAGCAGATTGCAGACAGCGATGAGCAGCCTCTATCATCCTACGACTTCGTGTACCTTCCCATTGATTTCAACAACAAGTGCAACGTGGGATATGGGTTTGTGAACATGACAAGCCCGGAGGCAACCCTGAGGCTCTACAAGGCTTTCCATCTTCAACATTGGGAGGTTTTTAATTCAAGAAAAATCTGCGAAGTCACCTATGCCAGAGTTCAGGGTTTGGAAGCATTGAAAGAGCACTTTAAGAACTCAAAATTCCCATGCGAGATGGAGCATTACTTGCCAGTGGTGTTTTCACCGCCTCGAGATGGGAGGGAACTGACGGAGCCACTTCCAATAGTGGGGAAGCAGCAGCAAACCATTCCAATTCCAATCGATGAGAATGAGAATGGCGGTGATGACGTGGCTAGCAGCAAAAGCGGCGGCGTAGGTGATGATGATAAAAAAGTGGGTGGAGGAAGCCTGCTAGTGCTAGGGTAG 1656 0.5248 MGETGIIVRFQGSLDPRAEEFRPSITNPIIQCQWYPLPLPLPLPLPLPLSPVTPPPPHLSTSSTRSLLLTPVPLTSESALRAELQALGDIRALQTEALRHGILTVHFFDLRHAESAFAAIRSTSMHLLSARPISAHYVLPSSSALPDAHNQGTLVIFNLDPNLSPDHLRRLFEPFGPVKELRDTPWKRNQRFVEFFDIRHAAKALKHMNGKEIHGKPVVIEFSRPGGHTRKFFHHSPPSPPLNFNLPPFPPSPQPRFAPPSHKKSSTNKGTGSVDALMGSMSLTGEVGNGNGVEAEDHHSHGPTRRNLTRKHNCETTLVGTTKQQQQQQLPRSRHWKGKQAKKHETRFLIKEDAIVDSGPKDTRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIADSDEQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGRELTEPLPIVGKQQQTIPIPIDENENGGDDVASSKSGGVGDDDKKVGGGSLLVLG 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00400 551 MobiDBLite consensus disorder prediction 232 343 - -
Pumo1g00400 551 SUPERFAMILY RNA-binding domain, RBD 153 442 IPR035979 GO:0003676
Pumo1g00400 551 MobiDBLite consensus disorder prediction 292 312 - -
Pumo1g00400 551 MobiDBLite consensus disorder prediction 240 258 - -
Pumo1g00400 551 FunFam Terminal EAR1-like 1 312 470 - -
Pumo1g00400 551 PANTHER RNA RECOGNITION MOTIF-CONTAINING 75 490 - -
Pumo1g00400 551 MobiDBLite consensus disorder prediction 512 551 - -
Pumo1g00400 551 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 218 IPR000504 GO:0003723
Pumo1g00400 551 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 225 IPR000504 GO:0003723
Pumo1g00400 551 SMART rrm1_1 153 221 IPR000504 GO:0003723
Pumo1g00400 551 MobiDBLite consensus disorder prediction 313 334 - -
Pumo1g00400 551 Gene3D - 146 232 IPR012677 -
Pumo1g00400 551 CDD RRM3_EAR1_like 364 465 IPR034458 -
Pumo1g00400 551 Gene3D - 313 470 IPR012677 -
Pumo1g00400 551 FunFam Protein MEI2-like 1 151 239 - -
Pumo1g00400 551 Pfam RNA recognition motif 2 364 474 IPR007201 -
Pumo1g00400 551 MobiDBLite consensus disorder prediction 259 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00400 Pumo-Chr1 5692323 5695024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00400 147 224 Eukaryotic Initiation Factors Gene Family AT4G34110 31.707 2.20e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00400 - - vum:124847631 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00400 1 5692323 5695024 Pumo1g00400 1 5692323 5695024 ECH