Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00399 ATGGGAAGCAAAGGTGGATTTTTCCGTTACGCAGATGGTGTTGACAAATTGCTATTACTCTTTGGGACTTTGGGTTGCATTGGAGGTGGCCTACAAACCCCTATGACAATGCTTGTTCTTGGCAGTTTGATAGATGATTATGCTGGTGGATCTGGACATTCGGTGTCCAACCATGTTATAGACAAGTACGCTCTAAGGCTGCTGGGTGTTGCTATTGGGGTTGCTTTATCCTCCTTTATAGAAGGGGTATGTTGGACAAGAACTGCAGAGAGACAAACTTCCCGCATGAGAACTGAATATCTCAAATCAGTCCTAAGGCAAGAAGTCGGTTTCTTCGACAAGCAAATTGACTCTTCCACAACTTTCCAAGTGCCCAATTGTCTTGGTCACCTCTCAGCATTTTTCTCTAGCTTTATGGTGGCACTCTTCCTTTCATGGAGACTTGCACTAGCTGCTTTTCCATTTTCAATCATAATGATCATGCCAGCTATCATATTTGGGAAGACCATGAAAGAGCTGGGAAGTAAAATGAAGGATGCATATGGAGTTGCTGGTAGCATAGCTGAACAAGCAATCTCATCAATTCGCACTGTTTATTCATATGTTGGTGAGAAGCAAACACTAGAAGCGTTCAACTCAGGTCTTCAGAAAAGTATGGAGATTGGCATAAAACTAGGTCAAACCAAGGGAGTAATTATTGGTAGCTTTGGGTTGCTATATGCTACTTGGGCATTCCAATCTTGGGTTGGTAGTATTCTGGTCAGGACAAAAGGAGAAAGTGGTGGCCCTGTGTTTTGTGCTGAAATATGCATCATTTGGGGAGGACTGTCTCTGATGAGTGCACTCCCAAATCTTGGTTTCATATTAGAGGCCACAACAGCTACTACCCGGATTTTTGAGATGATTGACCGAGTGCCAGCCATAAATTCTTATAAAGAAAAAGGAAAGGTCTTAACACATGCAAGAGGAGAGATCACATTTAACGAGGTTGAGTTTAGTTACCCATCAAGGCCAGATGCACCGATTCTCCAAGGACTGAATCTGAAAGTGCAGGCAGGTAAAACAGTAGGCCTAGTTGGAGGGAGTGGTTCTGGCAAATCTACTATCATCTCTTTGCTTGAAAGATTTTATGATCCTGTATATGGTGAGATATTGCTTGATGGATATGATATACAGACACTCCACATTAAGTGGTTAAGGTCCCAGATAGGACTTGTAAATCAGGAGCCAATTCTCTTTGCAACATCCATAAGGGAGAACATTCTATTTGGCAAGGAAGGAGCTTCAATGGAAGCTGTTATAAGGGCAGCAAAGGCAGCAAATGCACATGATTTCATTGTTAAACTTCCTAATGGATATGAAACTCAAGTAGGACAATTCGGAGCTCAGTTGTCAGGAGGGCAAAAGCAAAGGATTGCCATTGCAAGGGCTTTAATAAGAGAACCCAAAATCCTACTACTTGATGAAGCCACAAGTGCTTTGGATTCACAGTCCGAAAGACTGGTGCAAGATGCCCTTGATAAGGCTTCTAGAGGCAGGACAACAATCATCATAGCACATCGCCTATCCACAATTCGTAAGGCTGATTCAATAGTAGTTCTTCAATCAGGAAGAGTGGTTGAATGCGGTTCCCATGATGAACTACTCCAACTGAACAATGGACAAGGAGGGACTTACAGCAAAATGCTACAACTGCAACAAGCAACAAGTCAAGACGAAAATGCATTGCATCAAATAAACAAGAGCCCTTTAGCTATGGTAAATCAAACAAGTCGAATTTCTAGCTGGCAAAGTAGCCCAACTCATCATGCATTTAGCCCAACACAACCATTTAGTCCCATATATTCAATAAGTGTTGCATGGCCCAGCTTTGAGGACTACAGCAGCGAAAACTTTGAGAAATCTTCACATGCAAGCTTCTCTCAATGGCGTTTACTAAGAATGAATGCCCCTGAAAGGAAACATGCTTTGCTTGGGTGTTTAGGAGCCATTGGCTCTGGAATATGTCAACCAATTTACTCCTATTGCTTGGGAATAGTTGCATCTGTCTACTTTATAAAAGACAACTCTCTCATCAAATCAGAAATCAGGTTGTACTCGTCCATCTTCTGCTGCATAGCTGTTGTCAACTTCATTTCAGGCCTCATTCAACATTACAATTTCACCATTATGGGAGAGCGTTTGTTGAAAAGGGTGCGAGAAAATTTGCTAGGGAAGGTGCTGACTTTTGAGATGGGATGGTTTGACCAAGAGGAGAACAGCAGTGCAGCAATTTGTGCTCGTTTGGCAACTGAAGCTAACTTGGTTAGATCCCTTGTTGCAGAACGAATGTCATTGTTAGTCAATGTTTCTGTTATGGCTTTCTTGGCTTTTGTACTCAGTTTAATTGTTACATGGAGGGTGGCTATTGTCATGATTGCAATGCAGCCTTTGATCATTGCATGTTTCTACTCAAAAAACATTCTCATGAAAAGCATGGCTGGCAAAGCAAGAAGGGCTCAAACAGAGGGTAGTCAATTAGCAATGGAAGCTACTATCAATCACAGGACTATTGCTGCATTCTCATCTGAGAAGAGGATTTTAAATTTGTTCAGAACTGCTATGGAAGGCCCCAAGGAGGAAAGCATCAAGCAATCATGGATTTCAGGTTTCATATTGTCAGCTTCATATTTTGTAACAACAGCATCTATAACTTTGACTTTTTGGTATGGAGGGCGGTTATTGAATCAAGAACTAGTGGAATCAAAGCCTCTTTTGCAAGTTTTCCTCATTTTGATGGGCACTGGTAGACAAATTGCAGAGACAGCAAGCACAACTTCTGACATAGCTAAAAGTGGAAGAGCCATTAGTTCAGTATTTGCAATACTGGATAGGAAAAGTGAGATTGAACCAGAGGATCCTAGACATAGAAAGTTCAAAAATACTATGAAGGGCCATATAAAACTGAGAGATGTCTTTTTCTCATACCCAGCAAGGCCAGATCAAATGATTCTCAAGGGCCTAAGTCTTGATATTGAGCTGGCAAAACAGTTGCATTGGTGGGACAAAGTGGCTCCGGGAAAATCCACCATCATTGGCTTAATTGAAAGATTTTATGACCCCATGAAGGGATCCATATCCATAGACAATTGTGACATCAGGGAATTTAACTTGAGAAGTTTGAGATCACATATTGCCTTGGTGAGTCAGGAGCCAACCCTCTTTGCAGGAACTATACGTGACAACATTGTGTATGGCAAAAAGGATGCATCAGAAGATGAAATAAGAAAGGCAGCACGTCTTTCAAATGCTCATGAGTTTATAAGTTCAATGAAAGATGGTTATGATACTTACTGTGGAGAAAGAGGAGTGCAGCTGTCAGGAGGGCAGAAGCAGAGGATAGCAATTGCTCGAGCAGTGCTGAAGGACCCTTCAATCCTCCTGTTAGATGAAGCAACAAGTGCTCTAGACAGTGTGTCAGAGAATCTGGTACAGGAGGCACTCGAGAAAATGATGGTTGGAAGAACGTGTGTAGTTATAGCTCACCGTTTGTCGACAATACAAAGTGTTGATTCCATAGCTGTGATAAAAAATGGGAAGGTGGTGGAACAAGGGTCACACTCAGAGTTATTGAGCATGGGATCAGAGGGGGCTTATTACTCCTTGATTAGGCCACTCAACTTGAGGTGA 3669 0.4203 MGSKGGFFRYADGVDKLLLLFGTLGCIGGGLQTPMTMLVLGSLIDDYAGGSGHSVSNHVIDKYALRLLGVAIGVALSSFIEGVCWTRTAERQTSRMRTEYLKSVLRQEVGFFDKQIDSSTTFQVPNCLGHLSAFFSSFMVALFLSWRLALAAFPFSIIMIMPAIIFGKTMKELGSKMKDAYGVAGSIAEQAISSIRTVYSYVGEKQTLEAFNSGLQKSMEIGIKLGQTKGVIIGSFGLLYATWAFQSWVGSILVRTKGESGGPVFCAEICIIWGGLSLMSALPNLGFILEATTATTRIFEMIDRVPAINSYKEKGKVLTHARGEITFNEVEFSYPSRPDAPILQGLNLKVQAGKTVGLVGGSGSGKSTIISLLERFYDPVYGEILLDGYDIQTLHIKWLRSQIGLVNQEPILFATSIRENILFGKEGASMEAVIRAAKAANAHDFIVKLPNGYETQVGQFGAQLSGGQKQRIAIARALIREPKILLLDEATSALDSQSERLVQDALDKASRGRTTIIIAHRLSTIRKADSIVVLQSGRVVECGSHDELLQLNNGQGGTYSKMLQLQQATSQDENALHQINKSPLAMVNQTSRISSWQSSPTHHAFSPTQPFSPIYSISVAWPSFEDYSSENFEKSSHASFSQWRLLRMNAPERKHALLGCLGAIGSGICQPIYSYCLGIVASVYFIKDNSLIKSEIRLYSSIFCCIAVVNFISGLIQHYNFTIMGERLLKRVRENLLGKVLTFEMGWFDQEENSSAAICARLATEANLVRSLVAERMSLLVNVSVMAFLAFVLSLIVTWRVAIVMIAMQPLIIACFYSKNILMKSMAGKARRAQTEGSQLAMEATINHRTIAAFSSEKRILNLFRTAMEGPKEESIKQSWISGFILSASYFVTTASITLTFWYGGRLLNQELVESKPLLQVFLILMGTGRQIAETASTTSDIAKSGRAISSVFAILDRKSEIEPEDPRHRKFKNTMKGHIKLRDVFFSYPARPDQMILKGLSLDIELAKQLHWWDKVAPGKSTIIGLIERFYDPMKGSISIDNCDIREFNLRSLRSHIALVSQEPTLFAGTIRDNIVYGKKDASEDEIRKAARLSNAHEFISSMKDGYDTYCGERGVQLSGGQKQRIAIARAVLKDPSILLLDEATSALDSVSENLVQEALEKMMVGRTCVVIAHRLSTIQSVDSIAVIKNGKVVEQGSHSELLSMGSEGAYYSLIRPLNLR 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00399 1222 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 325 561 IPR003439 GO:0005524
Pumo1g00399 1222 SUPERFAMILY ABC transporter transmembrane region 644 964 IPR036640 GO:0005524|GO:0016020
Pumo1g00399 1222 ProSitePatterns ABC transporters family signature. 464 478 IPR017871 GO:0005524|GO:0016887
Pumo1g00399 1222 Pfam ABC transporter transmembrane region 658 917 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo1g00399 1222 Pfam ABC transporter transmembrane region 20 256 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo1g00399 1222 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 298 - -
Pumo1g00399 1222 SUPERFAMILY ABC transporter transmembrane region 7 306 IPR036640 GO:0005524|GO:0016020
Pumo1g00399 1222 CDD ABC_MTABC3_MDL1_MDL2 325 566 - -
Pumo1g00399 1222 Gene3D ABC transporter type 1, transmembrane domain 625 966 IPR036640 GO:0005524|GO:0016020
Pumo1g00399 1222 Gene3D ABC transporter type 1, transmembrane domain 7 581 IPR036640 GO:0005524|GO:0016020
Pumo1g00399 1222 SMART AAA_5 1015 1193 IPR003593 GO:0016887
Pumo1g00399 1222 SMART AAA_5 352 538 IPR003593 GO:0016887
Pumo1g00399 1222 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 265 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo1g00399 1222 Pfam ABC transporter 343 492 IPR003439 GO:0005524
Pumo1g00399 1222 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 980 1216 IPR003439 GO:0005524
Pumo1g00399 1222 Gene3D - 315 567 IPR027417 -
Pumo1g00399 1222 FunFam ABC transporter B family member 4 970 1220 - -
Pumo1g00399 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 972 1216 IPR027417 -
Pumo1g00399 1222 CDD ABC_6TM_Pgp_ABCB1_D2_like 646 962 - -
Pumo1g00399 1222 Pfam ABC transporter 1020 1147 IPR003439 GO:0005524
Pumo1g00399 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 566 IPR027417 -
Pumo1g00399 1222 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 657 944 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo1g00399 1222 Gene3D - 967 1219 IPR027417 -
Pumo1g00399 1222 CDD ABC_MTABC3_MDL1_MDL2 980 1217 - -
Pumo1g00399 1222 FunFam ABC transporter B family member 4 315 574 - -
Pumo1g00399 1222 ProSitePatterns ABC transporters family signature. 1119 1133 IPR017871 GO:0005524|GO:0016887
Pumo1g00399 1222 PANTHER ABC TRANSPORTER B FAMILY 7 565 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00399 Pumo-Chr1 5679439 5684537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00399 20 569 Calmodulin-binding Proteins AT2G36910 36.014 1.22e-97 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00399 K05658 - gmx:100804664 2198.7