Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00395 ATGTTAGGGGAAGAGGGGAAGGACAAAGCCCCCGGTGGTAGCGGTCTTGCATGGAAAACCTATTCTCGTTCGGTTTCATGGACTGATAGGTCTCCTAATAGCCGTAAGCCACCGACAAATAGCAAACCAAGACCACTGTTGCCACCTCTTCAACCTCTCTCAATCAACAAGCGCAACGTGGAGGAATGGCCTAGTGCTGGATCTGATGATCTTGGAGTTTGGCCACTTCCTCAGACTCCAAGAGGCTCCATCAGAGCCTACGATTCAAGTCAACCTACCAAGGATTTTCTCTTCAAGAAGGACAAATTGGCCTTCTTTGACAAGGAGTGTTCCAGAATTGCTGAGCATATATACTTGGGGAGTGACACAGTGGCCAAGAACCATGAACTCCTCAAGCAGAATGGAATCACTCATGTGCTCAACTGTGTTGGGTTTGTTTGTCCTGAGTATTTCAAAGGTGATTTTGTGTACAAGACACTTTGGTTGCAGGATAGTCCCACGGAGGACATCACAAGTATCCTCTATGATGTGTTTGATTACTTTGAGGATGTTCGAGAGCAAGGTGGGCGTGTCCTTGTCCATTGCTGTCAAGGGGTTTCTCGATCAACAGCTTTGGTAATTGCTTACCTCATGTGGAGGAAGGGGCAAAGCTTTGAAGATGCTTTTCAGTTTGTGAAGACTGCAAGGGCTGTGACCAACCCAAACATGGGTTTTGCTTGTCAACTTTTGCAGTGTCAGAAACGGGTCCATGCTATGCCTGCAAGTCCAAATTCTATTCTAAGGATGTACCGGATGGCTCCTCACTCCCCCTATGACCCTCTTCATCTGGTCCCCAAGATGGTTAACCAGCCAGGTGCACAAGCTCTTGATTCTCGTGGGGCCTTCATTATTCATATTCCTTCTGCTGTCTATGTCTGGAATGGGAAACATTGTAACTCGGTGATGTCATGCAATGCAAGGAGTGCAGCCTTTCAAGTGATCCGTTATGAGAGGGCAAAGGGTCCAATTCTGACCATCCATGAAGGTGAAGAACCACCTGGATTTTGGATTGCTCTTTCAGACGAGAAACGATTATCAGATGATTCTGACAAAGGAGGGGTCATGGAGGAGAGTGCTGAGCCAGTTGATTCTGGGACTGGTCCAAGAAAAGTTGATGCATATGATTTGGATTTTGAGATTTTCCACAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTTTCCTTGTCTGATCCAGGGTCAGAAACTTGCCTTCCCGCTAGAGAACATGGTTGGGCAAGACTGAGGAGAAAGTTTGCTAGTGGATTGCTCACATCCCCCAAATTGAACTGTGATGCTTGTTCAACCCCATGCAATGATCAACCCACTGTAACTGTCGAAGCTGAAAAACAACATTCTGCAGATGAGCCTTTGTCACCATCATCAATTCCTCCCTGTGGTTCACCGGATTCCTTTGAATGCTCCCCAAATAACAGCTTAGGTAGGGAAAAAGGTAGTCCTGAACCCAGGGACTTCTCTGTTCATGGTGTTGCTTCATCATTGCCACTGTCTCCTCCTGGCACATCATATCCTTTTCCTTGTTTTATAAGCTGCAGCCCAAAATTCAATTACAAGTCACCAACACTTTCACCTTCAAGTTCTGATTATGCCAGTTCATTTACTTTTTCACCTTCCTCTACCAACTGGTCCGACTTGTCCTTTGTGTCTTCTCGGCAGCCATCACCATCTGGCCTCGAATCAGCTGAACCCTTTTATGTTAAAGATGCGACTTTCTCAGAAAATTCCACTTTACTTCACAAAGAAGATGTCCCTTCACCCTTAGAGGAATTTTCGGCTAATCACACATTCGGAGGGGCAAACTCCAATTTGCCATTGAAAGGTTCTTCCCTCTCCATTGCAGAGCGCAGAGGGAGTAATCCACCGCCTCTGATGTTGCTACCCTCGGCCAGTGAATCCTCTCACGTCCCCAAGAACCTGGTAAGATCACTGTCTTTCTCTTTGCCTGACTTAGATGATAATGTGGTGAAGGATGACACTTGCAAACAATCTGACCGTGAAAACAAAGGAGAATGGCTAATATCAGATTACTATATCATTAGTTCAGGTTTTGAACCGCAGAGTGAGATTAATGACAAGGAGGATCGTGGTACAGAGTTATGTAATATAATGGCTGAGCTTGACATAGAGGAGAAAAGAAATGGGATGAGCTGA 2208 0.4592 MLGEEGKDKAPGGSGLAWKTYSRSVSWTDRSPNSRKPPTNSKPRPLLPPLQPLSINKRNVEEWPSAGSDDLGVWPLPQTPRGSIRAYDSSQPTKDFLFKKDKLAFFDKECSRIAEHIYLGSDTVAKNHELLKQNGITHVLNCVGFVCPEYFKGDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTALVIAYLMWRKGQSFEDAFQFVKTARAVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPGAQALDSRGAFIIHIPSAVYVWNGKHCNSVMSCNARSAAFQVIRYERAKGPILTIHEGEEPPGFWIALSDEKRLSDDSDKGGVMEESAEPVDSGTGPRKVDAYDLDFEIFHKALAGGVVPPFSLSDPGSETCLPAREHGWARLRRKFASGLLTSPKLNCDACSTPCNDQPTVTVEAEKQHSADEPLSPSSIPPCGSPDSFECSPNNSLGREKGSPEPRDFSVHGVASSLPLSPPGTSYPFPCFISCSPKFNYKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSRQPSPSGLESAEPFYVKDATFSENSTLLHKEDVPSPLEEFSANHTFGGANSNLPLKGSSLSIAERRGSNPPPLMLLPSASESSHVPKNLVRSLSFSLPDLDDNVVKDDTCKQSDRENKGEWLISDYYIISSGFEPQSEINDKEDRGTELCNIMAELDIEEKRNGMS 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00395 735 MobiDBLite consensus disorder prediction 1 52 - -
Pumo1g00395 735 MobiDBLite consensus disorder prediction 360 381 - -
Pumo1g00395 735 MobiDBLite consensus disorder prediction 477 494 - -
Pumo1g00395 735 ProSiteProfiles Dual specificity protein phosphatase domain profile. 109 251 IPR020422 GO:0006470|GO:0008138
Pumo1g00395 735 MobiDBLite consensus disorder prediction 457 505 - -
Pumo1g00395 735 ProSitePatterns Tyrosine specific protein phosphatases active site. 193 203 IPR016130 GO:0016311|GO:0016791
Pumo1g00395 735 Pfam Dual specificity phosphatase, catalytic domain 117 247 IPR000340 GO:0008138|GO:0016311
Pumo1g00395 735 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 105 251 IPR029021 -
Pumo1g00395 735 Gene3D Protein tyrosine phosphatase superfamily 88 251 IPR029021 -
Pumo1g00395 735 SMART dsp_5 109 248 IPR020422 GO:0006470|GO:0008138
Pumo1g00395 735 SUPERFAMILY Actin depolymerizing proteins 255 356 - -
Pumo1g00395 735 CDD DSP 110 244 - -
Pumo1g00395 735 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 168 229 IPR000387 GO:0016311|GO:0016791
Pumo1g00395 735 PANTHER MKPA PROTEIN 22 671 - -
Pumo1g00395 735 Gene3D Severin 261 359 IPR029006 -
Pumo1g00395 735 MobiDBLite consensus disorder prediction 19 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00395 Pumo-Chr1 5640332 5644513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00395 1 145 Protein tyrosine phosphatase (PTP) family AT3G55270 43.085 1.13e-32 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00395 - - gmx:100775448 1142.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00869 6 10858656 10861383 Pumo1g00395 1 5640332 5644513 PCT