Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo1g00389 | ATGGGTCTCTCAAATTTCCCAAATGCATCTGAAGGGGTGCTACCTGTGCTTGTGATAAACACAGTTCTCTCAGTGGCTGTGTTGAAGAACATGTTTAGATCCATGCTCCAAGTAGTAATTGGTGGCAGTGCTAGTACTTCCTCTGATCAGTCCCATGATGAAAGTTCACGGGAAAGGAGGGTGTCAATAACTCAGTACAAGTCATTGTGCCACGACATAAAAAGAAGCGCTAGCAGTGGATGGAGGGGTGTGGCCATGGTGGAGTGCTGCGTTTGTTTGTGTCGTTTTGAAGCCAATCAAGAGGTCAGCGAGTTGCCTTGCAAGCATTACTTCCACAGAGGTTGCTTGGATAAATGGTTTGATAACAAACACAGCACTTGCCCCTTGTGCCGTTCCATGGACTAG | 405 | 0.4691 | MGLSNFPNASEGVLPVLVINTVLSVAVLKNMFRSMLQVVIGGSASTSSDQSHDESSRERRVSITQYKSLCHDIKRSASSGWRGVAMVECCVCLCRFEANQEVSELPCKHYFHRGCLDKWFDNKHSTCPLCRSMD | 134 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo1g00389 | 134 | SUPERFAMILY | RING/U-box | 88 | 132 | - | - | |
Pumo1g00389 | 134 | PANTHER | - | 1 | 133 | IPR044249 | - | |
Pumo1g00389 | 134 | Pfam | Ring finger domain | 88 | 131 | IPR001841 | - | |
Pumo1g00389 | 134 | CDD | RING-H2_PA-TM-RING | 88 | 131 | - | - | |
Pumo1g00389 | 134 | SMART | ringv_2 | 88 | 131 | IPR011016 | GO:0008270 | |
Pumo1g00389 | 134 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 43 | 134 | IPR013083 | - | |
Pumo1g00389 | 134 | ProSiteProfiles | Zinc finger RING-type profile. | 89 | 131 | IPR001841 | - | |
Pumo1g00389 | 134 | SMART | ring_2 | 89 | 130 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo1g00389 | Pumo-Chr1 | 5590989 | 5592181 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo1g00389 | 1 | 132 | C3H Transcription Factor Family | AT2G04240 | 32.051 | 2.15e-22 | 85.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo1g00389 | K16285 | - | gmx:100811790 | 216.083 |