Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00389 ATGGGTCTCTCAAATTTCCCAAATGCATCTGAAGGGGTGCTACCTGTGCTTGTGATAAACACAGTTCTCTCAGTGGCTGTGTTGAAGAACATGTTTAGATCCATGCTCCAAGTAGTAATTGGTGGCAGTGCTAGTACTTCCTCTGATCAGTCCCATGATGAAAGTTCACGGGAAAGGAGGGTGTCAATAACTCAGTACAAGTCATTGTGCCACGACATAAAAAGAAGCGCTAGCAGTGGATGGAGGGGTGTGGCCATGGTGGAGTGCTGCGTTTGTTTGTGTCGTTTTGAAGCCAATCAAGAGGTCAGCGAGTTGCCTTGCAAGCATTACTTCCACAGAGGTTGCTTGGATAAATGGTTTGATAACAAACACAGCACTTGCCCCTTGTGCCGTTCCATGGACTAG 405 0.4691 MGLSNFPNASEGVLPVLVINTVLSVAVLKNMFRSMLQVVIGGSASTSSDQSHDESSRERRVSITQYKSLCHDIKRSASSGWRGVAMVECCVCLCRFEANQEVSELPCKHYFHRGCLDKWFDNKHSTCPLCRSMD 134
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00389 134 SUPERFAMILY RING/U-box 88 132 - -
Pumo1g00389 134 PANTHER - 1 133 IPR044249 -
Pumo1g00389 134 Pfam Ring finger domain 88 131 IPR001841 -
Pumo1g00389 134 CDD RING-H2_PA-TM-RING 88 131 - -
Pumo1g00389 134 SMART ringv_2 88 131 IPR011016 GO:0008270
Pumo1g00389 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 134 IPR013083 -
Pumo1g00389 134 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Pumo1g00389 134 SMART ring_2 89 130 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo1g00389 Pumo-Chr1 5590989 5592181 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00389 1 132 C3H Transcription Factor Family AT2G04240 32.051 2.15e-22 85.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00389 K16285 - gmx:100811790 216.083