Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00381 ATGATGACTTTCCATCCTAGAAAACTATTTTTCCCGTACCTTGGTTCCATGGGAAGGACAACCAATTATAGCTCAATAATACCTTCGCCTCTTCACTCACCATCAGTTCCGAGGTTTTCTCCCCCCCTCCTTGATGGAGATCACATGCGTCTAAACCTTGTAACCATCATTATAATTGTCATATCTGGCACAACTTGCATAATTGTGTTTCTCATCACCTTGTTCAAAATCCTAAGGTACTATTATCCAAGCAGATACAACGTTAGCAGAAGTAACCCACCAATATTATTCGACATTCGTGGAGGTTTCCCCTTTTCTGATGACGAGGAACATGAACAAGCCATTAGGCACCCCATATGGTTCATCCCCACAGAGGGTCTCCAACAATCAACCATAGACTCCATCACAGTTTGCAAATACAGAAAAGATGATGATGAAGAGTTGGTTAAAGAAACTGAGTGTCTTGTTTGCCTTGGTGAGTTTCAACAAGAAGAGAGTCTCAGACTCTTGCCAAAGTGTAAACACGCTTTTCACGTCCCTTGCATTGATACTTGGTTGAGATCTCATAAAAGTTGTCCCTTGTGCCGTGCCCCTATTGTTCATGATGTTGCTTGTGTTGGTGGTGGCACCGAGTCTGACTCAAGTCTTTCTGATCTGAACGAATACATAGAAGAAAGTAATAATTATAGTGGTGGAGTGAGGTTTGGAGATGAAGATTCTAGTGAAGAGGGGAGGGATGATGGAATTCAAGTTTTGAATGAATGTGTCGAGGTGAGTGGCCATTCTTCAATTCTAATTGGTTCTGCTTCTGATGTTAGAGCACAAGAATTTGAAGATGAAATAGAACCCATGAAGAGGTCTGTCTCGGTGGATTCATCTTCTGCTTCTGTGGTAGTTAGTGATGTGTTGGATTTAAATTTGGATATAGAAAGCTTAGACACCAACACCAACTTGGTGGTTGAAAAGAAGGTTTCAATTTCAAGTAACAAGGATGTTGCTATTGCTAAGGAGGGTAGCGAAAGTTCAACCGATAACAAACTGGCTTCAGTGCACGAGAGGCATTTCTCATTGAGGTTCTCTTCACATAACACAAAATTCACATTTTGTAGACGTAGCAGAAGCCAGAGTTTAACTCTTCCGTTGTGA 1146 0.4136 MMTFHPRKLFFPYLGSMGRTTNYSSIIPSPLHSPSVPRFSPPLLDGDHMRLNLVTIIIIVISGTTCIIVFLITLFKILRYYYPSRYNVSRSNPPILFDIRGGFPFSDDEEHEQAIRHPIWFIPTEGLQQSTIDSITVCKYRKDDDEELVKETECLVCLGEFQQEESLRLLPKCKHAFHVPCIDTWLRSHKSCPLCRAPIVHDVACVGGGTESDSSLSDLNEYIEESNNYSGGVRFGDEDSSEEGRDDGIQVLNECVEVSGHSSILIGSASDVRAQEFEDEIEPMKRSVSVDSSSASVVVSDVLDLNLDIESLDTNTNLVVEKKVSISSNKDVAIAKEGSESSTDNKLASVHERHFSLRFSSHNTKFTFCRRSRSQSLTLPL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00381 381 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 53 203 IPR044675 -
Pumo1g00381 381 SUPERFAMILY RING/U-box 144 202 - -
Pumo1g00381 381 CDD RING-H2_EL5-like 153 196 - -
Pumo1g00381 381 Pfam Ring finger domain 153 196 IPR001841 -
Pumo1g00381 381 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Pumo1g00381 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 201 IPR013083 -
Pumo1g00381 381 SMART ring_2 154 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00381 Pumo-Chr1 5531101 5532945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00381 53 296 C3H Transcription Factor Family AT1G72220 33.101 2.54e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00381 - - gmx:102667611 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00852 6 10639233 10640322 Pumo1g00381 1 5531101 5532945 PCT