Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00378 ATGAAGAGACTTAGCAGCTCAGATTCTTCAACTGCCCTCATGACAATTTGTCCATCAACAACAGAGGAACACAGTCCGAGGAACAGCCATCACATGTATGGCAGGGAGTTCCAATCGATGCTGGACGGGCTCGACGAGGAAGGGTGTGTTGAAGAACCGGGGCATCAATCTGAGAAGAAGCGTCGTCTAAGTGTAGATCAAGTCAAGGCTTTGGAGAAGAACTTTGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTGAAGCTCGCCCAAGAACTTGGGTTGCAACCTAGACAAGTAGCCGTTTGGTTCCAAAACCGTCGAGCCAGATGGAAAACCAAACAATTGGAGAGAGATTATGGTGTCCTTAAAGCCAATTATGATGCTCTTAAGCTTAACTATGACACCCTCGATCAGGACAACGAAGCCTTACGAAAGCAGATAAAGGAATTGAGATCGAGGCTGCAAGAAGAGAACACGGGAAGCGGTGTTTGGGTGAAGGAAGAGATAACGATGCCTGATTCCGAAGATAAAATGATGGAACAAAGTAAGAGCGACCCATCTTCTGAAACATCCATTCCTAGTTCGGAGTCGGAGGAGGATCACTTGAATTACGAGTGTTTGAACAAAGGCGACTGTGTCGGAGCCGCATCGCTCTTGCAAGTGGACTTCAAAGACGGTTCTTCCGACAGCGACTCAAGCGCGATCTTGAACGAAGACAACAGCCCCAAAGCCGCCATGACTCACCATCTCTTGCTGTCTCCGGAGGCCTCTCCCTTGAAATTCAATTGCTCCATATCAACCTCGCCGTCTTCGATGAACTGTTTCCAGTTCCAGAAAACGTATCACGCGCAGTACGTGAAGATGGAGGAGCACAATTTCTTGAGCGCGGATGAGGCCTGCAATTTCTTCTCGGATGAACAAGCTCCGACCCTGCAGTGGTACTGTCCAGACCAGTGGAGCTGA 966 0.4876 MKRLSSSDSSTALMTICPSTTEEHSPRNSHHMYGREFQSMLDGLDEEGCVEEPGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDTLDQDNEALRKQIKELRSRLQEENTGSGVWVKEEITMPDSEDKMMEQSKSDPSSETSIPSSESEEDHLNYECLNKGDCVGAASLLQVDFKDGSSDSDSSAILNEDNSPKAAMTHHLLLSPEASPLKFNCSISTSPSSMNCFQFQKTYHAQYVKMEEHNFLSADEACNFFSDEQAPTLQWYCPDQWS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00378 321 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Pumo1g00378 321 MobiDBLite consensus disorder prediction 173 201 - -
Pumo1g00378 321 Gene3D - 54 121 - -
Pumo1g00378 321 FunFam - 15 113 - -
Pumo1g00378 321 CDD homeodomain 59 115 IPR001356 GO:0003677
Pumo1g00378 321 SUPERFAMILY Homeodomain-like 37 116 IPR009057 -
Pumo1g00378 321 Coils Coil 113 161 - -
Pumo1g00378 321 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Pumo1g00378 321 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Pumo1g00378 321 Pfam Homeodomain 59 112 IPR001356 GO:0003677
Pumo1g00378 321 SMART HOX_1 57 118 IPR001356 GO:0003677
Pumo1g00378 321 MobiDBLite consensus disorder prediction 1 23 - -
Pumo1g00378 321 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 285 IPR045224 GO:0003700
Pumo1g00378 321 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Pumo1g00378 321 MobiDBLite consensus disorder prediction 1 30 - -
Pumo1g00378 321 Pfam Homeobox associated leucine zipper 114 156 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00378 Pumo-Chr1 5490033 5492082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00378 1 321 Homeobox Transcription Factor Family AT2G22430 45.970 2.67e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo1g00378 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00378 K09338 - gmx:100777924 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00850 6 10610541 10612980 Pumo1g00378 1 5490033 5492082 PCT