Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00369 ATGGAGGAGGAAGAGCATGAGGTGTACGGTGGCGAGATCCCCGACGTCGGAGAGATGGACGGAGACATCGAGGCTCACCATGACTCCGCCGACGTTGACATGTCCGCTGCCGACGACGACGACGCCGTTAAGGAGCTGGACGAGATGAAGAAGCGCTTGAAGGAAAAGGAAGAGGAAGCCACCGCTCTTCGTGAAATGCAAGCCAAGGTCGAGAAGGAGATGGGCGCTGTTCAAGATCCTGCCAGTTCAGATGCTTCTCAGGCCAACAGGGAGGAGACAGATTCTCGTTCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAACTACAGCAACACTTTCAATCTTGTGGTACGGTGAACAGGGTTACGATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTCCTTGAAACTGATGCGGTTCAGGAGGCTCTCCAATTGAATGAATCTGAATTGCATGGCCGTCAATTGAAGGTTATGCCTAAGAGGACCAACGTTCCTGGAATGAAACAATATCGTCCTAGGCGCTTTAATCCTTACATGGGGTATCGCTTCAGGAGGCCATATCCTCCTCCATACTTTTACTCCCCTTATGGATACGGAAAGTTTCCCAGGTTTAGAAGGCCAGGTCGGTACATGCCGTACTATTAG 675 0.5007 MEEEEHEVYGGEIPDVGEMDGDIEAHHDSADVDMSAADDDDAVKELDEMKKRLKEKEEEATALREMQAKVEKEMGAVQDPASSDASQANREETDSRSVFVGNVDYACTPEELQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLETDAVQEALQLNESELHGRQLKVMPKRTNVPGMKQYRPRRFNPYMGYRFRRPYPPPYFYSPYGYGKFPRFRRPGRYMPYY 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00369 224 SUPERFAMILY RNA-binding domain, RBD 84 195 IPR035979 GO:0003676
Pumo1g00369 224 CDD RRM_II_PABPs 97 167 - -
Pumo1g00369 224 SMART rrm1_1 97 168 IPR000504 GO:0003723
Pumo1g00369 224 MobiDBLite consensus disorder prediction 80 95 - -
Pumo1g00369 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 172 IPR000504 GO:0003723
Pumo1g00369 224 Coils Coil 36 73 - -
Pumo1g00369 224 MobiDBLite consensus disorder prediction 54 95 - -
Pumo1g00369 224 Gene3D - 22 179 IPR012677 -
Pumo1g00369 224 MobiDBLite consensus disorder prediction 54 72 - -
Pumo1g00369 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Pumo1g00369 224 MobiDBLite consensus disorder prediction 19 40 - -
Pumo1g00369 224 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 29 181 - -
Pumo1g00369 224 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00369 Pumo-Chr1 5404154 5409909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00369 97 167 Eukaryotic Initiation Factors Gene Family AT2G36660 34.722 2.75e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00369 K14396 - gmx:100789721 323.553