LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo1g00362	ATGGATTTGGCATCTGTTCTTTTTCTATTAACTAGCTTATGCTCTTCTGCGCTGGCTCAGCTTGATTTACAAGAAGATGCACTGTATGCATTGAAGGTATCATTGAATGCTTCTCCCAACCAGCTTACAAACTGGAACAAAAATCTAGTAAACCCTTGTACTTGGTCCAATGTTGAATGTGACCAGAATAGCAACGTTGTTCGAATTTCACTAGAATTTATGGGATTCACAGGATCGTTGACACCAAGAATAGGATCTCTAAAAAGTCTTACAATTCTTTCTTTGCAAGGGAATAACATCACTGGTGACATACCAAAAGAATTTGGAAATCTTACAAACTTGGTCAGATTGGATTTGGAAAACAACAAATTAACTGGTGAAATACCATATTCCCTTGGTAATCTTAAAAAGCTTCAATTCTTGACATTGAGTCAAAACAATCTCAATGGGACTATTCCAGAATCACTTGCCAGTCTCCCAAGCTTGATCAATGTTATGCTAGATTCAAATGATCTTAGCGGGCAGATTCCAGAGCCATTATTCAGCGTTTCTACGTACAATTTCACTGGAAATAATTTGAACTGTGGTGTGAATTATCATCACCTTTGCACATCTGATAATGCAGATCAAGGTTCGTCACATAAAACAAAAATAGGCCTCATAGTTGGAACAGTTACAGGTTTAGTTGTTATTCTTTTTCTTGGTGGTCTGCTGTTCTTCTGGTACAAGGGGTGCAAGCGTGATGTTTTTGTAGATGTTCCAGGTGAAGTCGATCGCCGAATTACATTTGGTCAAATAAAAAGATTTTCCTGGAAAGAACTACAGATAGCTACAGACAACTTCAGCGAGAAAAATATTTTAGGACAGGGAGGTTTTGGAAAGGTTTATAAAGGTATTCTGGCTGATGGCACCAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCAGCGGGTGATGCAGCTTTCCAGCGTGAAGTTGAGTTGATAAGCGTAGCTGTCCATAGGAACCTGTTACGGCTCATTGGTTTTTGTACTACTCCAACTGAACGCCTCTTAGTTTATCCTTTCATGCAAAACTTAAGTGTTGCCTATCGTCTACGAGAACTCAAACCTGGGGAACCTGTTTTAGATTGGCCAACTAGAAAACGAGTGGCTCTAGGAACTGCCCGTGGCCTAGAATATCTTCACGAGCAATGCAATCCAAGGATTATTCATAGGGATGTGAAGGCAGCTAATATATTACTAGATGGAGATTTTGAAGCAGTTGTTGGTGACTTTGGTTTGGCAAAATTAGTTGACGTTCGACGTACTAATGTGACAACTCAAGTTCGTGGGACAATGGGTCATATAGCTCCAGAATACTTGTCCACTGGAAAATCTTCAGAAAGGACAGATGTTTTTGGCTATGGGATTATGCTTTTGGAGCTTGTAACAGGTCAACGTGCAATTGAATTTTCACGTTTGGAAGAGGAAGATGACGTGTTATTGCTTGACCATGTTAAGAAACTGCAACGGGAGAAAAGACTAGATACTATTGTTGACTGCAACCTTAACAAAAATTACAACATAGAAGAGGTTGAAGTGATTGTACAAATTGCATTACTCTGCACACTAGCGTCACCCGAGGATCGTCCAGCAATGTCAGAGGTTGTAAGAATGCTAGAGGGTGAAGGGCTAGCTGAAAGATGGGAGGAATGGCAGCATGTGGAGGTCACTACAAGGCAAGATTATGAGAGACTACAAAGAAGAATGACCTGGGGAGAAGATTCGGTTTATAATCAAGATGCCGTTGAGTTGTCGGGTGGAAGATAA	1815	0.4022	MDLASVLFLLTSLCSSALAQLDLQEDALYALKVSLNASPNQLTNWNKNLVNPCTWSNVECDQNSNVVRISLEFMGFTGSLTPRIGSLKSLTILSLQGNNITGDIPKEFGNLTNLVRLDLENNKLTGEIPYSLGNLKKLQFLTLSQNNLNGTIPESLASLPSLINVMLDSNDLSGQIPEPLFSVSTYNFTGNNLNCGVNYHHLCTSDNADQGSSHKTKIGLIVGTVTGLVVILFLGGLLFFWYKGCKRDVFVDVPGEVDRRITFGQIKRFSWKELQIATDNFSEKNILGQGGFGKVYKGILADGTKVAVKRLTDYESPAGDAAFQREVELISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLDWPTRKRVALGTARGLEYLHEQCNPRIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVRRTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIEFSRLEEEDDVLLLDHVKKLQREKRLDTIVDCNLNKNYNIEEVEVIVQIALLCTLASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVTTRQDYERLQRRMTWGEDSVYNQDAVELSGGR	604

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo1g00362	604	Gene3D	Ribonuclease Inhibitor	22	204	IPR032675	-
	Pumo1g00362	604	ProSitePatterns	Protein kinases ATP-binding region signature.	287	309	IPR017441	GO:0005524
	Pumo1g00362	604	Gene3D	Phosphorylase Kinase; domain 1	250	357	-	-
	Pumo1g00362	604	Pfam	Leucine Rich repeats (2 copies)	88	125	IPR025875	-
	Pumo1g00362	604	SMART	serkin_6	281	555	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo1g00362	604	FunFam	Somatic embryogenesis receptor-like kinase 1	358	575	-	-
	Pumo1g00362	604	SUPERFAMILY	Protein kinase-like (PK-like)	260	556	IPR011009	-
	Pumo1g00362	604	Gene3D	Transferase(Phosphotransferase) domain 1	358	575	-	-
	Pumo1g00362	604	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	5	566	-	-
	Pumo1g00362	604	FunFam	Somatic embryogenesis receptor kinase 1	250	357	-	-
	Pumo1g00362	604	Pfam	Protein kinase domain	282	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo1g00362	604	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	21	205	-	-
	Pumo1g00362	604	Pfam	Leucine rich repeat N-terminal domain	24	61	IPR013210	-
	Pumo1g00362	604	ProSiteProfiles	Protein kinase domain profile.	281	560	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo1g00362	604	Coils	Coil	602	604	-	-
	Pumo1g00362	604	SUPERFAMILY	L domain-like	26	195	-	-
	Pumo1g00362	604	ProSiteProfiles	Phosphatidylinositol-specific phospholipase X-box domain profile.	449	560	-	-
	Pumo1g00362	604	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	404	416	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo1g00362	Pumo-Chr1	5328038	5334497	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo1g00362	1	604	Receptor kinase-like Gene Family	AT5G10290	72.697	0.0	873

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Pumo1g00362		Pkinase	1.3e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo1g00362	-		-	gmx:100786654	1101.27