Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00359 ATGTCCAATTCTAACTCCAATCCAAGCGCAGATCCGACCCGAATACTTCATTCTCAGGATCCGAATACCACCGCGGACCCTCAGGTTCCGCTTCGGAACCTATCCCAGGTTCGAACGAGAATGGATTCTCTACAACACTTCCTATCTCAATCCATCAACACCAACACTCCCCTCACCGTCGATCAAATCGCCATGGTCTCCAGCCAGATCGTCTCCTCCATCCACCAAGTCATCGTCAACGGCGCCGCCCTCGTCTCTTACTCTCAAAATTCCACCGCCGCCGTCGCACCGGATCCACCGTCGTATCCGAAGAAGCCAAAGCCAGAACCCTCCGCCGCCGATAAACACAAGCAACTACTCGATTCCAAACTCGAGCCTCCCGAAGACGACGACGGCGTCGAAGACTTCGACGATGGCAGCGAAATCGTGGAGCTCGACGCCGTGGAAATCCTCGCCGAGCACATGCACTTCTGCGAGATCTGCGGGAAAGGCTTCCGGCGAGACGCGAACCTCCGCATGCACATGCGCGCGCACGGGGACCAGTTCAAGACGCCGGAGGCGCTAGCGAAGCCTTCGGAGACCGCCGCGCGCCTCCGTTCAACGCGGTTCTCGTGTCCGTTCGAAGGCTGCAACCGGAACAAGCTCCACCGGCGGTTCCGGCCGCTGAAATCGGTGATTTGCGTGAAGAACCACTTCAAGCGGAGCCACTGCCCTAAGATGTACTCGTGCGAGCGGTGCCGCAAGAAGCACTTCTCGGTGCTCTCGGATTTGAAGAGCCACGCGAAGCACTGCGGAGGAGAGGCCAGGTGGAAGTGCACGTGCGGGACCACGTTCTCGAGGAAGGACAAGTTGTTCGGCCACGTTGCGCTATTTGAGGGCCACGCGCCTGCGCTCGCGTGCGACGAAGAGGCTAAAGGGAAACAAGTGGTGGAGGATGACGACGTTCCAATGTTGATGAATGAAAGTCGATTTGAATTGGATAATTGCTTTTTGGATGAAGAGTTGCCCCAAGGGTTCTTTGATGATTTCGGGTCCATTGATGACTACTGTTTAAGGGAAGTGTTAGGGTTTCCTAGTAATTGA 1083 0.5623 MSNSNSNPSADPTRILHSQDPNTTADPQVPLRNLSQVRTRMDSLQHFLSQSINTNTPLTVDQIAMVSSQIVSSIHQVIVNGAALVSYSQNSTAAVAPDPPSYPKKPKPEPSAADKHKQLLDSKLEPPEDDDGVEDFDDGSEIVELDAVEILAEHMHFCEICGKGFRRDANLRMHMRAHGDQFKTPEALAKPSETAARLRSTRFSCPFEGCNRNKLHRRFRPLKSVICVKNHFKRSHCPKMYSCERCRKKHFSVLSDLKSHAKHCGGEARWKCTCGTTFSRKDKLFGHVALFEGHAPALACDEEAKGKQVVEDDDVPMLMNESRFELDNCFLDEELPQGFFDDFGSIDDYCLREVLGFPSN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00359 360 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 18 311 IPR044300 GO:0010044|GO:0010447
Pumo1g00359 360 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Pumo1g00359 360 MobiDBLite consensus disorder prediction 1 29 - -
Pumo1g00359 360 Gene3D Classic Zinc Finger 239 290 - -
Pumo1g00359 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Pumo1g00359 360 SMART c2h2final6 203 236 IPR013087 -
Pumo1g00359 360 SMART c2h2final6 156 178 IPR013087 -
Pumo1g00359 360 SMART c2h2final6 241 263 IPR013087 -
Pumo1g00359 360 FunFam Zinc finger 45-like 152 179 - -
Pumo1g00359 360 Gene3D Classic Zinc Finger 156 179 - -
Pumo1g00359 360 MobiDBLite consensus disorder prediction 92 117 - -
Pumo1g00359 360 SUPERFAMILY beta-beta-alpha zinc fingers 153 179 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00359 Pumo-Chr1 5296208 5297613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00359 128 302 C2H2 Transcription Factor Family AT1G34370 58.470 4.85e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo1g00359 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00359 - - gmx:100809135 605.52