Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00355 ATGTGCGGAATCCTCGCAGTGTTGGGTTGCGTTGACAACTCTCAGGCCAAGCGCGCTCGCATCATCGAATTGTCTCGCAGGTTGCGGCATAGAGGTCCTGATTGGAGTGGCATACATTGCCATGAGGATTGTTACCTTGCTCATCAACGTCTTGCTATTGTTGACCCTACTTCAGGGGATCAACCTTTGTACAACGAAGACAAGACTGTTATTGTCACTGTAAATGGGGAGATATACAATCACAAGCAATTGAGGCAGAAACTGAGTTCCCATCAATTTCGAACTGGTAGTGATTGTGAAGTGATTGCCCATCTTTATGAAGAACATGGAGAAGACTTTGTTAATATGCTGGATGGGATGTTTGCCTTTATTCTTCTTGATACTCGGGATAAAAGTTTTATCGCTGCTCGTGATGCTATTGGCATTACCCCTCTGTACTTGGGCTGGGGTCATGATGGATCAACATGGTTTTCATCTGAAATGAAAGCTCTGAGTGATGATTGTGAGAGATTCATATCTTTTCCTCCAGGGCATATATATTCCAGCAAACAGGGAGGATTAAGAAGGTGGTACAATCCACCATGGTTTTCAGAGGATATTCCATCAACTCCCTATGATCCAATCCTTTTGCGTGAGACCTTTGAGAGGGCTGTAGTTAAGAGAATGATGACTGATGTACCTTTTGGAGTTCTTTTGTCCGGAGGATTGGACTCATCACTTGTTGCTGCTGTGGTCAATCGTTATTTGGCTGAATCTGAAGCTGCTCGTCAATGGGGATCACAGTTACATACTTTCTGCATTGGTTTAAAGGGCTCCCCGGACTTGAAAGCTGCAAAAGAGGTAGCAGATTATCTTGGTACTCGTCACCACGAACTTTATTTCACGGTTCAGGAAGGTATAGATGCACTTGAAGAAGTCATTTACCATATTGAAACATATGATGTAACAACTATCAGAGCAAGTACTCCAATGTTTCTTATGTCCAGAAAAATTAAAGCCTTGGGAGTGAAAATGGTTCTTTCTGGAGAAGGTTCAGATGAAATATTTGGAGGTTACCTGTATTTTCATAAGGCACCTAACAAGAAAGAGTTTCATGAAGAAACATGTCGAAAAATTAAAGCTCTTCATCTTTATGACTGCCTGAGAGCCAATAAATCTACTGCAGCATGGGGTGTAGAGGCACGTGTACCATTCTTGGATAAAGAATTTATCAACGTAGCCATGAGTATAGATCCGGAGTGGAAAATGATAAGGCATGATCTTGGAAGGATAGAGAAGTGGGTACTACGCAATGCATTTGATGATGATAAGAATCCATATTTACCAAAGCACATATTGTACAGGCAGAAGGAACAGTTCAGTGATGGGGTTGGTTACAGCTGGATTGATGCCTTGAAGGATCATGCTAACAAACAAGTCTCAGATGCAACGATGAATGCTGCCAATTTTATTTACCCTGAAAACACTCCTACTACCAAAGAAGGATACCTCTACAGGACAATTTTTGAGAAGTTCTTCCCAAAGAATGCAGCAAAGGCAACAGTGCCAGGAGGTCCTAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCATCATGGTCAAAAAATCTTGATCCTTCTGGTCGTGCCGCGCTTGGTGTTCATGCAGCTGCATATGATGATGCAGTGGATGCCAAAATTGACGAGCCCAAAAATGGAACCCTTTAA 1713 0.4256 MCGILAVLGCVDNSQAKRARIIELSRRLRHRGPDWSGIHCHEDCYLAHQRLAIVDPTSGDQPLYNEDKTVIVTVNGEIYNHKQLRQKLSSHQFRTGSDCEVIAHLYEEHGEDFVNMLDGMFAFILLDTRDKSFIAARDAIGITPLYLGWGHDGSTWFSSEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPWFSEDIPSTPYDPILLRETFERAVVKRMMTDVPFGVLLSGGLDSSLVAAVVNRYLAESEAARQWGSQLHTFCIGLKGSPDLKAAKEVADYLGTRHHELYFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKALGVKMVLSGEGSDEIFGGYLYFHKAPNKKEFHEETCRKIKALHLYDCLRANKSTAAWGVEARVPFLDKEFINVAMSIDPEWKMIRHDLGRIEKWVLRNAFDDDKNPYLPKHILYRQKEQFSDGVGYSWIDALKDHANKQVSDATMNAANFIYPENTPTTKEGYLYRTIFEKFFPKNAAKATVPGGPSVACSTAKAVEWDASWSKNLDPSGRAALGVHAAAYDDAVDAKIDEPKNGTL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00355 570 Gene3D HUPs 195 514 IPR014729 -
Pumo1g00355 570 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 192 IPR029055 -
Pumo1g00355 570 PANTHER ASPARAGINE SYNTHETASE 1 554 - -
Pumo1g00355 570 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 209 484 - -
Pumo1g00355 570 FunFam Asparagine synthetase [glutamine-hydrolyzing] 2 192 - -
Pumo1g00355 570 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 195 IPR029055 -
Pumo1g00355 570 CDD Asn_Synthase_B_C 211 456 IPR001962 GO:0004066|GO:0006529
Pumo1g00355 570 PIRSF Asn_synthetase_glu-h 1 362 IPR006426 GO:0004066|GO:0006529
Pumo1g00355 570 PIRSF Asn_synthetase_glu-h 355 516 IPR006426 GO:0004066|GO:0006529
Pumo1g00355 570 Pfam Asparagine synthase 210 361 IPR001962 GO:0004066|GO:0006529
Pumo1g00355 570 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 185 IPR017932 -
Pumo1g00355 570 CDD AsnB 2 192 IPR033738 -
Pumo1g00355 570 FunFam Asparagine synthetase [glutamine-hydrolyzing] 195 514 - -
Pumo1g00355 570 Pfam Glutamine amidotransferase domain 48 165 IPR017932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00355 Pumo-Chr1 5237287 5243312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00355 2 164 PRT Gene Family AT4G38880 26.442 2.11e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00355 K01953 - gmx:732660 1139.02