Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00346 ATGACGCGGCAGAATGTGGTAGTGTCTGATACTAAATCCGGAGTGTCCTTAACGGTTTTCCCAACAACAACACGAAAGCCACCGGCGGCGCCAGGAGGGTACATTTCCATTTCAAGGAGGAGGATTTTGAAGAACCTTGAAATCAATGGAGGCCAAAGAATCAATGCATGGGTTGAGTCCATGAGAGCCTCCTCTCCAACCCATCTTAAATCCACACCTTCTTTGTCTCAGGAGCACAAGTCTTGGATTCTTCACCATCCATCAGCATTAGACATGTTTGACCAAATTATTGACGCGTCAAAGGGAAAACAAATTGTCATGTTTCTGGATTACGATGGCACGCTGTCTCCTATAGTCGACGACCCTGACCGAGCTTTCATGTCTGATTCGATGAGAAAAACAGTGAGGAAACTTGCTAGGTGTTTCCCTACTGCTATAGTGACCGGCAGATGCAAAGACAAGGTGTACAATTTTGTTCGCTTGGCAGAGTTATATTATGCAGGAAGCCATGGCATGGATATTAAAGGACCAACAAGAAGCTCCAAATACAACAAAGATAGCAAAGCTGATGCACTTCTTTTTCAACCTGCCAGTGATTTTCTTCCCATGATAGATGAGGTGTATCAACAATTAGTTGAAAAGACAAAATCAACTCCTGGAGCTCTGGTTGAGAACAACAAGTTCTGCCTCTCTGTTCATTTTCGTTGTGTTGATGAAAAGAAATGGAGTGAACTGGCACGCCAAGTGAAATCAGTTTTAAAGGAGTACCCGAAGCTCCGACTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAAGGGAAGGCCTTGGAATTTTTATTAGAGTCACTTGGTTTGGCCAATTGTAGTGATGTCTTTCCTGTTTATATTGGCGATGATCGATCCGATGAAGATGCTTTCAAGAAATTAAGAGACAGAGGACAAGGTTTTGGCATTCTTGTCTCCAAATTTCCGAAAGACACAAGTGCATCTTACTCTTTACAAGAACCCAACGAGGTGATGAACTTTCTTCAACGCTTGGTGGAGTGGAAACATGTGTCCCTGCGAGCACGTTCCCGAGTGTAA 1101 0.4369 MTRQNVVVSDTKSGVSLTVFPTTTRKPPAAPGGYISISRRRILKNLEINGGQRINAWVESMRASSPTHLKSTPSLSQEHKSWILHHPSALDMFDQIIDASKGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCKDKVYNFVRLAELYYAGSHGMDIKGPTRSSKYNKDSKADALLFQPASDFLPMIDEVYQQLVEKTKSTPGALVENNKFCLSVHFRCVDEKKWSELARQVKSVLKEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGLANCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEVMNFLQRLVEWKHVSLRARSRV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00346 366 SUPERFAMILY HAD-like 106 355 IPR036412 -
Pumo1g00346 366 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 22 360 IPR044651 GO:0004805|GO:0005992
Pumo1g00346 366 CDD HAD_TPP 106 347 - -
Pumo1g00346 366 Gene3D - 105 197 IPR023214 -
Pumo1g00346 366 Gene3D - 201 364 IPR023214 -
Pumo1g00346 366 FunFam Trehalose 6-phosphate phosphatase 203 362 - -
Pumo1g00346 366 FunFam Trehalose 6-phosphate phosphatase 105 192 - -
Pumo1g00346 366 Pfam Trehalose-phosphatase 108 342 IPR003337 GO:0003824|GO:0005992
Pumo1g00346 366 NCBIfam HAD-IIB family hydrolase 107 318 IPR006379 -
Pumo1g00346 366 NCBIfam trehalose-phosphatase 103 353 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00346 Pumo-Chr1 5136672 5139819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00346 101 352 Trehalose Biosynthesis Gene Families AT1G70290 26.199 4.03e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00346 K01087 - gmx:100815357 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00346 1 5136672 5139819 Pumo1g00346 1 5136672 5139819 ECH