Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00345 ATGGCAAAAGTTATGGATATGTACAATACTAGTAGCATCATGATACCGGATTTCTTAGACCCGTGTAGTGATGAAGAGCTGATGAAAGCACTTGAGCCTTTTATGAAAAGTGATTCATCTAGCACTTCCTCAATAACTTACCCTTATTCATTCTCGTCTCCCAATTTCTCCTCATCAACAACAACATGGAGCACCCAAATTTTCTCCCCAAGCTACGACCAAAAGGTTCCAAACCAGGCAAGTTCCATGAAACTGAACCAACTCACCCCATCTCAAATATTTCAAATCCAGGTTCCACGAGGCCAAAACAACTTCCTGAGCCCAAAACCCGTTCCCATGAAGCAGAAGCAGGTGCGTGCTCCTGCTTCTAAGCCCAGAAAGCTTTACCGTGGGGTGAGGCAGAGACACTGGGGCAAGTGGGTGGCTGAGATCAGACTCCCCAAGAACCGCACACGTCTCTGGCTCGGTACATTTGATACCGCAGAGGAAGCAGCGTTGGCATACGACAACGCAGCGTTTAAGCTAAGAGGAGAACACGCGAGGCTCAACTTCCCTCATCTACGTCACCATGGAGCACGTGTCTATGGCGAGTTTGGGAACTACAAGCCTCTCCCCTCCGCAGTTGATGCCAAGCTCCAAGCCTTGGTCATCAATTCGCAGAAACTGAAAACTGAAAAGGCAGAAACAGAAACATCGGAGTTTGAGGTTGAGAACCAAACATCATCCTTGGCCTTGTCGGATGAATATTCCTCTTCCCCTGAATCCAATATTACTTTCTTGGATTTCTCGGATTCTTGTGAAACAACGGACAATCTTGGGTTGGACTTGGAGAAGTACCCTTCCGTGGAGATTGATTGGGCAGCTTTGTCTTTTGTTGAATTTTAG 885 0.4689 MAKVMDMYNTSSIMIPDFLDPCSDEELMKALEPFMKSDSSSTSSITYPYSFSSPNFSSSTTTWSTQIFSPSYDQKVPNQASSMKLNQLTPSQIFQIQVPRGQNNFLSPKPVPMKQKQVRAPASKPRKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGEHARLNFPHLRHHGARVYGEFGNYKPLPSAVDAKLQALVINSQKLKTEKAETETSEFEVENQTSSLALSDEYSSSPESNITFLDFSDSCETTDNLGLDLEKYPSVEIDWAALSFVEF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00345 294 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 6 289 - -
Pumo1g00345 294 SMART rav1_2 128 191 IPR001471 GO:0003700|GO:0006355
Pumo1g00345 294 Gene3D AP2/ERF domain 128 186 IPR036955 GO:0003700|GO:0006355
Pumo1g00345 294 SUPERFAMILY DNA-binding domain 128 186 IPR016177 GO:0003677
Pumo1g00345 294 FunFam Ethylene-responsive transcription factor 2 127 186 - -
Pumo1g00345 294 CDD AP2 127 187 IPR001471 GO:0003700|GO:0006355
Pumo1g00345 294 PRINTS Ethylene responsive element binding protein signature 151 167 IPR001471 GO:0003700|GO:0006355
Pumo1g00345 294 PRINTS Ethylene responsive element binding protein signature 129 140 IPR001471 GO:0003700|GO:0006355
Pumo1g00345 294 MobiDBLite consensus disorder prediction 106 127 - -
Pumo1g00345 294 ProSiteProfiles AP2/ERF domain profile. 128 185 IPR001471 GO:0003700|GO:0006355
Pumo1g00345 294 Pfam AP2 domain 129 178 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00345 Pumo-Chr1 5116346 5117775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00345 4 290 AP2-EREBP Transcription Factor Family AT4G39780 49.196 4.82e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo1g00345 AP2 2.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00345 K09286 - gmx:106796800 392.504