Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00337 ATGGCTTCTTCAGCGATGGAGACCTGCAAATCAGATGATGTGCACATGCAGGTGGACATTGAGAAGAACGCACAGGATGTAAGGTCTCAGTGGGTTCTCAACGCTCCTGAGCCCCCAAGTCCCTGGCGTGTGGTTGCAGATTCTGTGACCAAAACCATCTCCCACTATAAACATAAGTTTTCCTCTCTCACGGATCAACCCTGCACCACACTCCTCCTTTCAGTTCTGCAGGTCCTTTTTCCTATTCTTGCTTGGGGCAGAAACTACACTGCTACTAAGTTCAGGAAAGATCTTCTTGCAGGCCTCACTATTGCTAGTCTCTGTATTCCCCAGAGCATTGGGTATGCCACCTTAGCACATCTTGATCCTCAATATGGCCTTTATACAAGTGTGGTACCACCACTTATCTATGCTGTAATGGGAACCTCAAGAGAGATAGCAATTGGTCCTGTGGCAGTGGTTTCTCTGCTGTTATCCTCAATGATGGAGAAATTAGTAGACCCTGCTGCTGATCCAGTGGGTTATACAAAGCTGATTTTGCTTGCTACTCTCTTTGCTGGTATCTTTCAGACTTCCTTCGGACTCTTCAGGCTGGGGTTCCTTGTGGATTTCCTATCCCATGCTGCAATAGTTGGATTTGTGGCAGGAGCAGCCATTGTGATTGGGCTTCAACAGTTAAAGGGACTCTTAGGAATCACCCATTTTACGACCAAAACCGACATAGTCTCTGTCATGAAAGCTGTTTGGGAAGCAGTTCATAATCCGTGGAACCCTCGAAATTTTATCCTGGGATGCTCGTTCTTGTTCTTCATCCTAACGATGAGATTTCTGGGTAAAAGGAAGAAGAAGCTGTTCTGGTTGGCATCAATCTCTCCTCTTGTATCTGTTGTTGTGTCAACTCTAATTGTGTTTCTGACAAGAGCTGACAAAAATGGAGTTAAAATTGTGAAACATGTGAAAGGGGGCTTGAATCCAAGCTCCATCCATCAGTTAGACTTCAACAACCCCTACATTGGAGAAGTGGCCAAAATTGGACTAGTGGTTGCTGTCGTTGCCCTTACCGAATCTATTGCTGTTGGGCGATCATTTGCATCCATCAAAGGATACCAACTTGATGGAAACAAGGAGATGATGTCAATAGGTTTGACAAACATCATAGGATCTTTCACCTCCTGCTACGTTGCAACTGGTTCGTTCTCCCGTACTGCTGTTAATTATGCATCTGGGTGTGAAACTTTGGTGTCAAACATTGTGATGGCCATCACAGTGTTGATATCGCTGCAGTTTTTGACAAAGCTCTTGTATTATACTCCAACAGCTATTCTTGCTTCTGTTATCCTCTCTGCCCTCCCAGGACTCATTGACGTAACTGAAGCTTACAAAATTTGGAAGGTTGACAAGATAGACTTTCTTGCTTGCGCTGGAGCATTCTTTGGAGTACTGTTTGCTTCTGTGGAGATTGGTCTTCTAGTGGCGGTGGTAATATCTTTCTCAAAGATCATTCTCATCTCAATTCGACCAGGCACAGAAACTCTAGGAAAACTTCCGGGAACTGATTTGTTCTGCGATGTCTATCAGTATCCTATGGCAGTTAAGATTCCCGGGGTTATGATAATACGAGTCAAGTCTGCGTTGCTTTGCTTTGCAAATGCTAATTTCGTTAGAGAAAGGATCATTAAATGGGTCACTGAGGAAGAATCAGAAGATGACAAGGGAAATTCAAGAAGCACCATTCAACTCGTAATTCTTGACACCTCCAATTTGGTGAACGTTGACACCTCTGGAATTGCTGCTCTAGAGGAACTGCATAAGAGTTTGTCTTCACATGGAAGACAGTTAGCGATTGCGAACCCTAGGTGGCAAGTGATACACAAGCTAAAGGTGTCCAACTTTGTCGGCAAAATCGGTGGCAGAGTCTTTCTGACTGTTGAAGAAGCTGTTGGCTGCAAGAGCCGCTGCTAA 1962 0.4455 MASSAMETCKSDDVHMQVDIEKNAQDVRSQWVLNAPEPPSPWRVVADSVTKTISHYKHKFSSLTDQPCTTLLLSVLQVLFPILAWGRNYTATKFRKDLLAGLTIASLCIPQSIGYATLAHLDPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMMEKLVDPAADPVGYTKLILLATLFAGIFQTSFGLFRLGFLVDFLSHAAIVGFVAGAAIVIGLQQLKGLLGITHFTTKTDIVSVMKAVWEAVHNPWNPRNFILGCSFLFFILTMRFLGKRKKKLFWLASISPLVSVVVSTLIVFLTRADKNGVKIVKHVKGGLNPSSIHQLDFNNPYIGEVAKIGLVVAVVALTESIAVGRSFASIKGYQLDGNKEMMSIGLTNIIGSFTSCYVATGSFSRTAVNYASGCETLVSNIVMAITVLISLQFLTKLLYYTPTAILASVILSALPGLIDVTEAYKIWKVDKIDFLACAGAFFGVLFASVEIGLLVAVVISFSKIILISIRPGTETLGKLPGTDLFCDVYQYPMAVKIPGVMIIRVKSALLCFANANFVRERIIKWVTEEESEDDKGNSRSTIQLVILDTSNLVNVDTSGIAALEELHKSLSSHGRQLAIANPRWQVIHKLKVSNFVGKIGGRVFLTVEEAVGCKSRC 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00337 653 CDD STAS_SulP_like_sulfate_transporter 527 641 - -
Pumo1g00337 653 Pfam STAS domain 527 646 IPR002645 -
Pumo1g00337 653 Pfam Sulfate permease family 94 474 IPR011547 GO:0016020
Pumo1g00337 653 NCBIfam sulfate permease 81 643 IPR001902 GO:0016020|GO:0055085
Pumo1g00337 653 PANTHER SULFATE TRANSPORTER 66 648 IPR001902 GO:0016020|GO:0055085
Pumo1g00337 653 ProSiteProfiles STAS domain profile. 546 650 IPR002645 -
Pumo1g00337 653 ProSitePatterns SLC26A transporters signature. 123 144 IPR018045 GO:0008271|GO:0008272
Pumo1g00337 653 Gene3D STAS domain 506 652 IPR036513 -
Pumo1g00337 653 SUPERFAMILY SpoIIaa-like 531 647 IPR036513 -
Pumo1g00337 653 FunFam Sulfate transporter 31 506 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00337 Pumo-Chr1 4961554 4968762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00337 25 647 Inorganic Solute Cotransporters AT5G10180 69.872 0.0 898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00337 K17469 - gmx:100817831 1228.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00337 1 4961554 4968762 Pumo1g00337 1 4961554 4968762 ECH