Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00331 ATGTTACGGCTGAGCCTAGCCGTTAAACTACGCTGCGAGGCTATGAGCTTGCAGGCTGGAGCTGTTGTCGGTGCTGATCTGGAGAGGGTGCAGTGTTCTGGATTGATCTGCTTGGGAGTGAGTGACGCAAAGCGAAGCGAAGCTGGCGACCACACTGACTTGGAGGAAAGAAATGGTGATGGGAAGGCTCAAGATTCAGAGCCTCTACCTCCCCATTCAGTTCTGAAGATGGGATTGAGAGAACGTAGCAACAGCAGCAGCATGGAGGATCCAGATGGGACATTAGCAAGTGTTGCCCAATGCATTGAGCAGCTGCGTAAGAGCTCATCTTCTATGCAAGAGAGAGAGTCTTCTTTGAAGCAGTTATTGGAGCTTATTGATATGCGAGAAAATGCTTTTAGTGCTGTTGGATCTCATTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGGTCATTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCACTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCTTTGCTTGGTCTACTCAAGTCCAGTTCTGCTGAAGGTCAAGTAGCTGCTGCAAAGACTATATTTGCTGTCTCTCAAGGTGGTGCCAAAGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTTGTTCCAGTGTTATGGGAGCAGCTGCAAAAGGGCCTGAAGACTGGAAATGTAGTTGATAATTTATTGACTGGGGCATTGAAAAATCTCTCCAGCAGCACTGAGAGATTCTGGAATGCCACAATACAAGCTGGAGGAGTGGACATATTAATTAAGTTACTGACAACAGGGCAGTCTAGCACTTTAGCAAATGTGTGCTTTTTACTTGCTTGTATGATGATGGAGGATGCATCTGTTTGTTCAAAGTTGTTGACAGCAGAGGCAACAAAACAACTCCTCAAACTTTTAGGCCCTGGTAATGATGCCCCTGTCAGGGCTGAAGCAGCCGGTGCTCTTAAATCTCTATCTGCTCAGTGCAAAGATGCAAGGAAAGAGATAGCCAATTCCAATGGCATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAGGGTGAGTATGCTCAAGCATTACAGGAGAATGCTATGTGTGCTTTAGCAAACATCTCTGGTGGTTTGTCATATGTCATCTCCAGTCTTGGTCAAAGCCTTGAATCATGCTCCTCACCTACCCAAGCTGCCGACACATTGGGGGCTTTAGCTTCAGCTCTTATGATATATGACGACAAGGCAGAATCTACCAGGGCATCAGATCCTTTGGTAGTTGAGCAGACATTGCTTGAACAATTTAAACCTCGCTTGCCATTCCTTGTGCAGGAGCGGACCATTGAAGCCCTCGCTAGTTTGTATAGCAATCCTATACTGTCAATTAAACTTGCAAATTCTGATGCAAAGCGTTTGCTTGTTGGTTTAATAACAATGGCTGCCAATGAAGTGCAAGATGAGCTTCTAAAATCTCTCTTGACATTGTGCAATACTGAATGCAGTCTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTGGGGCTTTCATCAGAACAGCAGCAAGAATGTGCTGTTGCCCTCCTTTGCCTTTTATCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCTCTTGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGACTCAGCAACAATCCTTAGGAACCTATGCGATCACAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTGCTGTGGCTGTTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCAGCAAAGACTCTGAATCACTTAATTCATAAATCTGATACAGCAACTATCAGTCAGCTTACAGCATTATTGACTAGTGATTTACCTGAATCTAAGGTTTATGTTTTAGATGCTTTGAGAAGTATGCTTTCAGTTGTTGCTCTTACTGATCTTCTACGTGAAGGTAGTGCTGCCAGTGATGCAATTGATACAATGATAAAATTGTTGAGCTCAACGAAGGAAGAAACTCAGGCAAAGTCTGCATCTGCTCTGGCGGGAATTTTTGAAACAAGGAAAGATGTGCGTGAAAGCAGCATTGCTGTTAAAACTCTTTGGTCAGCAATGAAGTTGCTTAATGTTGAATCTGAAAGTATCTTAATGGAGTCCTCGCGCTGCTTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTGGCTGCTATTGCTAGAGATGCATTACCCTCCCTAGTTGCACTAGCTAACTCTTCAGTTTTGGAAGTGGCGGAGCTGGCAACATGTGCTGTGGCAAATCTTATTTTGGATAGTGAAATTGCTGAGAAAGCTGTTGCAGAAGAAGTCATATTGGCTGCTACCAGAGTATTACGTGAAGGCACAATTTCTGGTAAAACACATGCTGCTGCAGCAATTGCTCGCCTCTTACATAAGAGGCAAGTTGATTATGCTGTAACTGATTGTGTGAATCGAGCTGGCACTGTTCTTGCATTAGTTTCTTTCTTAGACTTTGCTATCAATGGACCTAGTTCCACATCAGAAGCTCTAGAAGCACTTGCCATGCTGTCCAGGTCAGAAGTGACCGGTGCACACAGTAAACCTGCTTGGGCAGTTTTGGCTGAATTTCCTAAAAGCATAAGCCCAATAGTTCTGTCTATTGCTGATTCAATGCCAGTGTTGCAGGATAAAGCTATTGAAATATTATCTCAATTATGTAAGGATCAGCCTTTTGTTCTGGGAGACACTGTTGTTACTGCCTCTGGATGTATATCTTCTATAGCTAAGAGGATAATCAATTCCACTTCTAAAAATGTAAAGGTCAAAATTGGAGGAGCTGCTGTTCTTATTTGTGCTGCTAAAGTAAATCATCAGAGGCTGGTGGAGGATCTCAATTTATCAAACTTGTGTGCTAATCTTGTTCAGTCTCTTGTCGATATGCTTATATCTTCACAGGCTACTTTGGATATTCAGGGTGATGACAGCAGGGAAGTTATCAGCATTTGCAGGCATACAAAAGAAGCCAATGATGGTAAATCAAGCACCAGCACCGCTATTATTTCCGGTGCCAACTTAGCTATATGGTTACTGTCTGTTCTTGCTTGCCATGATGAAAAAAGTAAAATTGCAATAATGGATGCTGGAGCAATTGAGGTTCTCACTGACAGGATTGCAAATTGTTTCTCACAATATAGTCAGTTTGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTTCAAGATAGGGATATCATTCGAGCACATGCAACCATGAAATCCATACCTTCCCTTGCCAATTTATTGAAGTCAGAGGAATCGGCAAACAGATATTTCGCTGCACAATCAATAGCTAGCCTAGTCTGTAACGGTAGCAGGGGAACGCTTCTGTCTGTTGCAAATTCTGGGGCAGCAGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAATTGTCAGAGGAATTTTCTTTGGTGCATTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCTCTAGTTGATCTGCTCAAACCAATTCCAGAACGCCCAGGAGCACCATTTTTAGCACTTGGGCTTTTGACTCAGCTTGCTATAGATTGTCCATCGAATAAGATTGTAATGGTTGAGGCAGGGGCCCTAGAGGCACTTTCTAAGTATCTTTCACTAGGTCCACAAGATGCAACTGAAGAAGCTGCTACAGATCTGTTAGGAATTCTGTTTAGTAGTGCAGAAATACGGAAACATGAGTCAGCATTTGGAGCTGTTACTCAACTTGTAGCTGTCCTGCGTTTAGGAGGAAGAACTGCGAGGTATAGGGCTGCAAAAGCTTTGGAAAGTTTATTCTCTGCTGACCATATTAGAAATGCAGAAACTGCTCGACAAGCTGTTCAACCCTTGGTGGAGATTCTTAATACTGGTTTAGAGAGAGAGCAGCATGCTGCAATTGCTGCATTAGTTAGGTTACTGAGTGAAAACCCTTCAAAAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGCAGGATTCTTTCATCAGATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTCTGTTCTTTTTGGAAATACAAGGATTCGGTCAACAATGGCTGCTGCACGTTGTGTTGAACCTCTGGTCTCTCTCCTTGTCAGTGAGTTTAGTCCTGCTCACCATTCAGTTGTCCGGGCATTGGATAGGCTTGTTGATGATGAGCAACTGGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGCCTACTTTATGGTAGGAATTTTGTACTTCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGACCAACTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTAGACATTCTTCATGAAGCACCTGATTATCTATGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCTAAAGGACCATCGGCTGCTAAAGTTGTTGAACCCTTGTTTATGTTGCTGACAAGACAAGAATTTGGACCAGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACATCCACAGTGTCGTGCTGATTACACATTGACTTCTCACCAAGCTATTGAACCTCTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCGCATCTACTTTTAGAAGAACACCTTCAGAAAGATCCAGTGACGCAACAGGTAATCGGCCCTCTTATACGAGTTCTTGGTTCTGGTATACATATATTGCAGCAGAGAGCTGTAAAGGCCCTGGTCAGTATTGCACTGATATGGCCAAATGAAATTGCAAAAGAGGGTGGTGTTATTGAAATTTCAAAAGTTATATTGCAAGCTGATCCTTCCATTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCTAGTATTCTGCAATTTAGTTCTGAATACTACTTGGAAGTTCCAGTTGCTGTTTTGGTTAGGCTGCTTCGATCTGGCTTAGAAAGCACAGTTGTTGGTGCATTAAATGCTCTTCTTGTGTTGGAAAGTGATGATGGAACTAGTGCCGAAGCAATGGCTGAAAGTGGTGCTATAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGCGAGGAAACTGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCATTATCCCATTATCTCTTGGACCCACAAACCCAAGCACAACAAGCAAGGTTATTAGCAACTCTGGCTCTTGGTGATCTATTTCAGAATGAGGGTCTTGCTCGGACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAAAACCTTGTGATGTACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCTGGTGGGGTTCAGGTTATACTGGATCTGATAGGTTCAAGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTATTTTCAAATCATACCATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAGGACTTATGGGCTACTGGAACTGTGAACGATGAGTATCTTAAAGCCTTAAATTCTCTATTTAGCAACTTCCCGAGACTGAGAGCAACTGAACCAGCAACACTTAGCATTCCCCATCTGGTTACATCCTTAAAGACAGGCTCTGAGGCTACTCAGGAAGCTGCCTTGGATGCACTTTTCCTACTTAGGCAAGCTTGGTCAGCATGTCCAGCAGAAGTTTCAAGAGCTCAGTCAATAGCAGCTGCAGATGCTATTCCTTTACTGCAGTACTTAATCCAGTCTGGCCCACCTCGCTTTCAGGAGAAGGCAGAATTTTTATTGCAGTGTTTGCCAGGCACTTTGGTGGTGATCATCAAGCATGGTAACAATATGAAGCAATCTGTTGGAAACCCAAGTGTTTTTTGCAAGCTTACACTTGGAAACACTCCTCCAAGGCAAACCAAGGTAATTTTAATAATAATTTCATATTTATTATCTTGTCTTGTAATCTTCTCCTCTAATGCACTAGGATTAATTGAAATGGGTGATGTGCTTGTTTTATGTGAGACTAATATATGA 6420 0.4273 MLRLSLAVKLRCEAMSLQAGAVVGADLERVQCSGLICLGVSDAKRSEAGDHTDLEERNGDGKAQDSEPLPPHSVLKMGLRERSNSSSMEDPDGTLASVAQCIEQLRKSSSSMQERESSLKQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKGLKTGNVVDNLLTGALKNLSSSTERFWNATIQAGGVDILIKLLTTGQSSTLANVCFLLACMMMEDASVCSKLLTAEATKQLLKLLGPGNDAPVRAEAAGALKSLSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQAADTLGALASALMIYDDKAESTRASDPLVVEQTLLEQFKPRLPFLVQERTIEALASLYSNPILSIKLANSDAKRLLVGLITMAANEVQDELLKSLLTLCNTECSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVALTDLLREGSAASDAIDTMIKLLSSTKEETQAKSASALAGIFETRKDVRESSIAVKTLWSAMKLLNVESESILMESSRCLAAIFLSIKENRDVAAIARDALPSLVALANSSVLEVAELATCAVANLILDSEIAEKAVAEEVILAATRVLREGTISGKTHAAAAIARLLHKRQVDYAVTDCVNRAGTVLALVSFLDFAINGPSSTSEALEALAMLSRSEVTGAHSKPAWAVLAEFPKSISPIVLSIADSMPVLQDKAIEILSQLCKDQPFVLGDTVVTASGCISSIAKRIINSTSKNVKVKIGGAAVLICAAKVNHQRLVEDLNLSNLCANLVQSLVDMLISSQATLDIQGDDSREVISICRHTKEANDGKSSTSTAIISGANLAIWLLSVLACHDEKSKIAIMDAGAIEVLTDRIANCFSQYSQFDYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPSLANLLKSEESANRYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVHYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPERPGAPFLALGLLTQLAIDCPSNKIVMVEAGALEALSKYLSLGPQDATEEAATDLLGILFSSAEIRKHESAFGAVTQLVAVLRLGGRTARYRAAKALESLFSADHIRNAETARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAARCVEPLVSLLVSEFSPAHHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNFVLHEAISRALVKLGKDRPTCKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFMLLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQAIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAKEGGVIEISKVILQADPSIPHALWESAASVLASILQFSSEYYLEVPVAVLVRLLRSGLESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSHYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVILDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKHGNNMKQSVGNPSVFCKLTLGNTPPRQTKVILIIISYLLSCLVIFSSNALGLIEMGDVLVLCETNI 2139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00331 2139 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 62 2104 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Pumo1g00331 2139 SUPERFAMILY ARM repeat 914 1195 IPR016024 -
Pumo1g00331 2139 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 571 613 IPR000225 GO:0005515
Pumo1g00331 2139 FunFam Coatomer beta subunit 1652 2065 - -
Pumo1g00331 2139 MobiDBLite consensus disorder prediction 47 73 - -
Pumo1g00331 2139 Gene3D - 649 855 IPR011989 -
Pumo1g00331 2139 MobiDBLite consensus disorder prediction 47 63 - -
Pumo1g00331 2139 Coils Coil 332 352 - -
Pumo1g00331 2139 Gene3D - 451 648 IPR011989 -
Pumo1g00331 2139 SUPERFAMILY ARM repeat 1616 2064 IPR016024 -
Pumo1g00331 2139 SUPERFAMILY ARM repeat 98 807 IPR016024 -
Pumo1g00331 2139 Gene3D - 76 442 IPR011989 -
Pumo1g00331 2139 Gene3D - 1401 1711 IPR011989 -
Pumo1g00331 2139 Gene3D - 1854 2065 IPR011989 -
Pumo1g00331 2139 SUPERFAMILY ARM repeat 1222 1604 IPR016024 -
Pumo1g00331 2139 Gene3D - 1218 1400 IPR011989 -
Pumo1g00331 2139 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1232 1276 IPR000225 GO:0005515
Pumo1g00331 2139 Pfam Armadillo/beta-catenin-like repeat 560 600 IPR000225 GO:0005515
Pumo1g00331 2139 Pfam Armadillo/beta-catenin-like repeat 139 169 IPR000225 GO:0005515
Pumo1g00331 2139 Gene3D - 1712 1853 IPR011989 -
Pumo1g00331 2139 Gene3D - 856 1217 IPR011989 -
Pumo1g00331 2139 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1416 1650 - -
Pumo1g00331 2139 SMART arm_5 1475 1515 IPR000225 GO:0005515
Pumo1g00331 2139 SMART arm_5 1220 1263 IPR000225 GO:0005515
Pumo1g00331 2139 SMART arm_5 1434 1474 IPR000225 GO:0005515
Pumo1g00331 2139 SMART arm_5 1602 1643 IPR000225 GO:0005515
Pumo1g00331 2139 SMART arm_5 303 344 IPR000225 GO:0005515
Pumo1g00331 2139 SMART arm_5 1893 1933 IPR000225 GO:0005515
Pumo1g00331 2139 SMART arm_5 768 806 IPR000225 GO:0005515
Pumo1g00331 2139 SMART arm_5 346 395 IPR000225 GO:0005515
Pumo1g00331 2139 SMART arm_5 1347 1388 IPR000225 GO:0005515
Pumo1g00331 2139 SMART arm_5 1766 1805 IPR000225 GO:0005515
Pumo1g00331 2139 SMART arm_5 1517 1557 IPR000225 GO:0005515
Pumo1g00331 2139 SMART arm_5 602 642 IPR000225 GO:0005515
Pumo1g00331 2139 SMART arm_5 171 211 IPR000225 GO:0005515
Pumo1g00331 2139 SMART arm_5 129 170 IPR000225 GO:0005515
Pumo1g00331 2139 SMART arm_5 852 894 IPR000225 GO:0005515
Pumo1g00331 2139 SMART arm_5 560 600 IPR000225 GO:0005515
Pumo1g00331 2139 SMART arm_5 1265 1306 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00331 Pumo-Chr1 4907354 4917886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00331 523 655 U-box Gene Family AT2G23140 40.741 6.69e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00331 - - gmx:100816765 3731.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00778 6 9508663 9518974 Pumo1g00331 1 4907354 4917886 PCT