Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00325 ATGAGACCTCTCTCTAAGCTCTTCAACAAGCTTTGTGGGAAAATGATAATCCTATTAGTATCCCTCCTAATAGAACTTATCATTCTCATTCAGAAGCTAAGGTCATCACGTCCAATTAGCACCAGGCAATACCTCAAATTCATCGAGAAGAAGAACCCCACCATTTCCTACACCAAAAGATTGAAGGCAGAGCAAGCAGAGTGCAGAGTATGCTTGTCCGAATTCGAGGAAGGGGAGAAGGTGAGGAAATTGAAATGCCAACACACATTTCATAGGGATTGTTTGGACCAGTGGTTGCAACAATATTGGGCAACGTGCCCACTTTGTAGGAAACAAGTCGTGCCTGATGATCTTGTGTTCAAGCATCGTCAGCATCAGAATCAAGCAGATAATCATGACCGCCTTCCCTATCTTTTATCAGCATTTCGTGGTGGTGACAACACTTTGCACAGATATCTCTGA 462 0.4329 MRPLSKLFNKLCGKMIILLVSLLIELIILIQKLRSSRPISTRQYLKFIEKKNPTISYTKRLKAEQAECRVCLSEFEEGEKVRKLKCQHTFHRDCLDQWLQQYWATCPLCRKQVVPDDLVFKHRQHQNQADNHDRLPYLLSAFRGGDNTLHRYL 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00325 153 FunFam Putative RING zinc finger domain superfamily protein 39 115 - -
Pumo1g00325 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 116 IPR013083 -
Pumo1g00325 153 ProSiteProfiles Zinc finger RING-type profile. 68 110 IPR001841 -
Pumo1g00325 153 SUPERFAMILY RING/U-box 46 116 - -
Pumo1g00325 153 PANTHER - 1 144 - -
Pumo1g00325 153 Pfam Ring finger domain 67 110 IPR001841 -
Pumo1g00325 153 SMART ring_2 68 109 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00325 Pumo-Chr1 4853231 4853754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00325 66 121 C3H Transcription Factor Family AT1G15100 57.143 2.84e-19 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00325 K16282 - gmx:102668078 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00774 6 9471696 9472337 Pumo1g00325 1 4853231 4853754 PCT