Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00324 ATGGCCGATCACGCAGATTCTTCTCCTTTGGTTCCTCCCCTTCCCCTCACTGACCCTTCCGAGATCGACCTCGAAGCCGGTCCCTCCGAACAAATCCAATGCCGAATTTGTCTCGAAACTGACGGTAGAGATTTCATAGCCCCTTGTAAGTGCAAAGGTACATCAAAATATGTGCATCGAGAATGTTTGGATCATTGGCGAGCAGTTAAGGAAGGGTTTGCCTTTGCTCACTGCACTACGTGCAAGGCTCCTTATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGCGTACCCTGAAATTTCGGTTTTTTGTCACCAGAGACATTTTGTTTATTTTTCTGTCTGTCCAGCTTGTCATTGCTTCACTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAGTATTGGCTTCGTCTTCTCTGGGGTTTTGATAGTGAAATGAGCTTTTACTACATATGTGGAGCTCTATTGTTTTTCGCCTTGCTTGGCCTTTCTGGGTGCTTCATTACCTGTTATGATCGAAGAGTTCGCAATGATTTAGCTCAGCCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCAGACTGTCATTTGCCAGGCACTCTTTGTATGTGGACTGATTGCACCACATGCTTTGAGAGTTGTGGAACCATGGCAACTGAATGTGGTGGTTGTTTGGGGGGTGCTGGGGAAGCAGGGCTACCATTATTATTCATTATGGCTTTGATTGTTCTGGGACTTTTTACTGTAATTGGGATATTCTACAGTGTATTGGTTGCTACCATGGTAGGTCAACGGATATGGCAACGTCATTATCACATACTTGCAAAAAGGATGTTAACAAAGGAGTATGTGGTTGAAGACGTTGATGGAGAGCTGACAGGATCTGATTGGTCTCCCCCGGCTCTCCCACCCGAGCATGTTCAGCAGTTGAAAACATTGGGCCTATTATGA 972 0.4486 MADHADSSPLVPPLPLTDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILFIFLSVQLVIASLAYLVYLIDGYQQYWLRLLWGFDSEMSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGELTGSDWSPPALPPEHVQQLKTLGLL 323
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00324 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Pumo1g00324 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Pumo1g00324 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Pumo1g00324 323 SMART ringv_2 33 82 IPR011016 GO:0008270
Pumo1g00324 323 SUPERFAMILY RING/U-box 29 86 - -
Pumo1g00324 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 20 322 - -
Pumo1g00324 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 96 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo1g00324 Pumo-Chr1 4839587 4845026 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00324 1 323 C3H Transcription Factor Family AT2G22120 85.802 0.0 566
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00324 - - gmx:100791777 663.685
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00772 6 9453831 9458363 Pumo1g00324 1 4839587 4845026 PCT