Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00310 ATGGTTTCTAGAGAGCAAAAGAGAGAAGCACTGCATGAGAAGCTGCAGCTTCTTCGTTCTATTACCAACTCTCATGCCTTAAATAAAACCTCGATCATAATAGATGCATCAAAGTATATCGAAGAGTTAAAGCAAAAAGTAGAAAGACTGAATCAAGACGTAGCCAATGCACAAACTTCAAGTGACCAAAATACTTTGCCTATGGTTACAGTAGAAACCTTAGAAAATGGTTTTCTTATAAATGTTTATTCAGCAAAGAGCTGTCCCGGTCTGCTTGTTTCCATATTGGAGTCATTTGAAGAGATGGGTCTTAATGTGCTTGAAGCTAGGGTTACTTGTACGGACACCTTTCGATTTCATGCTGTTGGAGGAAAAAATGAAGAACAAGGTGGGAGTATTGATGCACAAGCTGTGAAACAGGCAATGGGACAAGCAATAAAGAACTGGAGCCAAAATGCTGACCAAAAGTAA 471 0.3907 MVSREQKREALHEKLQLLRSITNSHALNKTSIIIDASKYIEELKQKVERLNQDVANAQTSSDQNTLPMVTVETLENGFLINVYSAKSCPGLLVSILESFEEMGLNVLEARVTCTDTFRFHAVGGKNEEQGGSIDAQAVKQAMGQAIKNWSQNADQK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00310 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 151 - -
Pumo1g00310 156 Coils Coil 33 60 - -
Pumo1g00310 156 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 60 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00310 Pumo-Chr1 4708396 4709931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00310 11 142 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 29.861 6.34e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00310 - - gmx:100814138 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00310 1 4708396 4709931 Pumo9g02252 9 55772379 55773878 ECH
Pumo5g01030 5 23065066 23066953 Pumo1g00310 1 4708396 4709931 ECH
Pumo1g00573 1 8912065 8914086 Pumo1g00310 1 4708396 4709931 ECH
Pumo1g00310 1 4708396 4709931 Pumo1g00310 1 4708396 4709931 ECH
Pumo1g00310 1 4708396 4709931 Pumo9g02252 9 55772379 55773878 PCT