Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00308 ATGTCTCCGGCCGCCGGAGCCAGCGTCCCCCTCTTGGGGGATTCCAAAGCAGCGGCGCCGCCTGCGTCCGTCCCCGGCGCGGTGTTCAACGTGGCCACCAGCATAGTCGGCGCCGGAATCATGTCGATTCCGGCGATCATGAAGGTTCTCGGCGTGGTTCCCGCTTTCGTGATGATTCTGGTGGTGGCCGTGCTGGCGGAACTCTCGGTGGACTTCCTGCTGCGTTTCACGCACTCCGGCGAAACGACGACGTACGCCGGCGTCATGAGGGAAGCGTTCGGATCGCCGGGAGCGTTGGCTGCACAAGTTTGCGTCATCATCACCAACGTTGGGGGTTTAATTCTCTACCTTATCATCATCGGGGATGTGCTATCTGGAAAGCAAAATGGAGGTGAAGTGCATTTGGGGCTTTTGCAACAGTGGTTTGGAATTCACTGGTGGAATTCCCGGGAATTTGCTTTGCTTTTCACCTTGGTCTTTGTTATGCTTCCATTGGTATTGTACAAACGTGTAGAGTCCTTGAAGTACAGTTCTGCAGTGTCAACTCTTCTTGCAGTGGCATTTGTTGGCATATGTTGTGGGTTGGCTATCGCTGCTCTGGTGCAAGGAAAAACACAAACTCCTAGATTGTTTCCTCGGTTAGACTACCAAACCTCATTCTTTGATCTGTTCACTGCAGTTCCTGTTGTTGTCACAGCCTTCACATTTCATTTTAATGTGCATCCCATTGGGTTTGAGCTTGCCCAGCCATCCCACATGACAACAGCAGTTCGATTAGCATTATTGCTGTGTGCTGTGATCTACATTTCAATAGGCCTATTTGGGTACCTCTTGTTTGGGGATTCAACCCAGTCAGACATTCTCATCAATTTTGACCAGAATGCTGATTCTGCGGTTGGTTCCTTGTTCAATAGTTTGGTCCGTGTAAGCTATGCACTTCACATCATGCTGGTGTTTCCTCTAGTGAACTTCTCTTTGAGAGCCAACATAGATGAAGTGCTCTTCCCCAGGAAGCCTCTGCTAGCTACAGACAACAAAAGATTTGTGATCCTCACTCTGGTGCTGCTTGTATTCTCCTACCTTGCAGCTATAGCAATCCCAGATATTTGGTACTTCTTTCAGTTTCTGGGATCATCATCCGCAGTGTGCCTTGCCTTCATTTTTCCCGGCTCTATTGTTTTAAGGGATGCTCATGGTATATCAACCAGAAGGGACAAAATTATAGCATTGATTATGATTATACTAGCTGTGGTGACAAGTGTGCTTGCCATTTCTACCAACATATATAATGCTTTTAGTAGCAAGTCATAA 1311 0.4821 MSPAAGASVPLLGDSKAAAPPASVPGAVFNVATSIVGAGIMSIPAIMKVLGVVPAFVMILVVAVLAELSVDFLLRFTHSGETTTYAGVMREAFGSPGALAAQVCVIITNVGGLILYLIIIGDVLSGKQNGGEVHLGLLQQWFGIHWWNSREFALLFTLVFVMLPLVLYKRVESLKYSSAVSTLLAVAFVGICCGLAIAALVQGKTQTPRLFPRLDYQTSFFDLFTAVPVVVTAFTFHFNVHPIGFELAQPSHMTTAVRLALLLCAVIYISIGLFGYLLFGDSTQSDILINFDQNADSAVGSLFNSLVRVSYALHIMLVFPLVNFSLRANIDEVLFPRKPLLATDNKRFVILTLVLLVFSYLAAIAIPDIWYFFQFLGSSSAVCLAFIFPGSIVLRDAHGISTRRDKIIALIMIILAVVTSVLAISTNIYNAFSSKS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00308 436 Pfam Transmembrane amino acid transporter protein 22 425 IPR013057 -
Pumo1g00308 436 PANTHER AMINO ACID TRANSPORTER 16 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00308 Pumo-Chr1 4690577 4693181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00308 9 430 Amino Acid or Auxin Permease AAAP Family AT3G56200 60.190 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00308 - - gmx:100815694 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00308 1 4690577 4693181 Pumo1g00308 1 4690577 4693181 ECH
Pumo1g00308 1 4690577 4693181 Pumo9g02256 9 55803188 55816649 PCT
Pumo9g02255 9 55796681 55798480 Pumo1g00308 1 4690577 4693181 PCT