Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00297 ATGGTAGAAGTGGAAAAAACCAACCTCACTTCACATTGCTTCCACCGTGTTTCTGATAAGAAGAAAGAAAGATGGAAGACTACTCATTCCAACACACAAAACCCATGTTGTATTTTGTTTCTCTTTTGTGTGTGGAGTCTTGTGTTCCACTCATGCGTGAGGCCAGTTTTGTGTGAAGATGAGGGTTGGGATGGAGTGGTTGTGATGGCATCAAACTTCTTAGCACTTCAAGCCTTCAAGCAAGAGTTGGTTGATCCCGAAGGCTTCTTGCAGAGCTGGAATGATAGTGGCTATGGAGCTTGTTCCGGAGGTTGGGTTGGAATCAAGTGTGCTCAGGGACAGGTTATTGTGATCCAGCTTCCATGGAAGGGATTGAGAGGGTGTATCACAGATAAAATTGGCCAACTTCAAGGCCTTAGGAAGCTTAGTCTTCATGATAACCAAATTGGTGGTTCCATCCCTCCTTCTTTAGGTTTCTGCCCTTTGCTTCAGTCTCTTGACCTCAGCAACAACTTGCTCACAGGAACAATCCCTTATAGCCTTGCCAATTCCACCAAGCTTTATTGGCTTAACTTGAGTTTTAACTCCTTCTCTGGTCCTTTACCAGCTAGTCTAACTCACTCTCTTTCTCTCATTTTCCTTTCTCTTCAACATAATAATCTCTCTGGCTCCCTTCCTAACTCATGGGGTGGGAATCCCAAGAGTGGCTTCTTTAGGCTTCAAAATTTGATCCTAGATCACAACTTTTTCACTGGAAATGTTCCTGCTTCTTTGGGTAGCTTAAGAGAGCTCAATGAGATTTCCCTTGGTCATAATAAGTTTAGTGGAGCTATTCCAAATGAAATAGGAACCCTTTCTAGGCTTAAGACACTAGACATTTCTAATAATGCCTTGAATGGGAGCTTGCCTGCTACCCTCTCTAATTTATCCCCACTTACACTGCTGAATACAGAGAACAACCTCCTTGAAAATCAAATCCCTGAAAGTTTAGGTAGATTGCGTAATCTTTCTGTTCTAATTTTGAGTAGAAATCAATTTAGTGGACATATTCCTTCAAGCATTGCTAACATTTCCACGCTTAGGCAGCTTGATTTGTCACTGAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTGACAGTCAACGTAGTCTTGAACTCTTCAATGTTTCTTACAATACCTCTCGGGTTCTGTTCCCCCTCTACTTGGCAGGAAATTCAACTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGGTACAGCCCTTCAACCCCATGTCCTTCACAAGCTCCATCATAAGGAGTCATTGCCCCACCTCCTGAAAAAGAGAGCAACATCAAAGGCCGAGGATGGCCGAGCCGCTGGAAGAGCTGGCGCTACGAGGACAGAAAAAGGAGTCCCTCCTGTTGCTGCTGGTGATGTTGAAACAGGAGGGGAGGCTGGAGGGAAGCTAGTCCATTTTGATGGACCAATGACTTTTACAGCTGATGATCTCTTGTGTGCAATAGCTGAGATCATGGGAAAGAGCACCTATGGAACTGTGTATAAGGCTATATTGGAGGATGGAAGTCAAGTTGCAGTAAAGAGATTGAGGGAAAAGATCACTAAAGGTCAGAGAGAATTTGAATCAGAAGTCAGTGTTCTAGGAAAAATTAGACACCCCAATGTCTTGGCTCTGAGGGCCTATTACTTGGGATCCAAAGGGGAAAAGCTTCTGGTTTTTGACTACATGCCTAAAGGAAGTCTTGCTTCTTTCCTACATGGTGGTGGAACTGAGACATCCATTGATTGGCCAACAAGGATGAAAATAGCACAGGACATGGCTCGTGGCTTGTTTTACCTTCATTCCCAGGAGAACATTATACATGGGAACCTCACATCCAGCAATGTGTTGCTTGATGAGAATACAAATGCTAAAATTTCAGATTTTGGTCTTTCTCGGTTGATGTCAACTGCTGCTAATTCCAACGTGATAGTCTACAGTCTTGGTGTTATCTTGTTAGAACTCCTAACGAGGAAGTCACCTGGGGTGTCTATGAATGGACTAGATTTGCCTTAG 2058 0.4334 MVEVEKTNLTSHCFHRVSDKKKERWKTTHSNTQNPCCILFLFCVWSLVFHSCVRPVLCEDEGWDGVVVMASNFLALQAFKQELVDPEGFLQSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLRGCITDKIGQLQGLRKLSLHDNQIGGSIPPSLGFCPLLQSLDLSNNLLTGTIPYSLANSTKLYWLNLSFNSFSGPLPASLTHSLSLIFLSLQHNNLSGSLPNSWGGNPKSGFFRLQNLILDHNFFTGNVPASLGSLRELNEISLGHNKFSGAIPNEIGTLSRLKTLDISNNALNGSLPATLSNLSPLTLLNTENNLLENQIPESLGRLRNLSVLILSRNQFSGHIPSSIANISTLRQLDLSLNNLSGEIPVSFDSQRSLELFNVSYNTSRVLFPLYLAGNSTQAHLWEIFNYVGTALQPHVLHKLHHKESLPHLLKKRATSKAEDGRAAGRAGATRTEKGVPPVAAGDVETGGEAGGKLVHFDGPMTFTADDLLCAIAEIMGKSTYGTVYKAILEDGSQVAVKRLREKITKGQREFESEVSVLGKIRHPNVLALRAYYLGSKGEKLLVFDYMPKGSLASFLHGGGTETSIDWPTRMKIAQDMARGLFYLHSQENIIHGNLTSSNVLLDENTNAKISDFGLSRLMSTAANSNVIVYSLGVILLELLTRKSPGVSMNGLDLP 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00297 685 MobiDBLite consensus disorder prediction 443 457 - -
Pumo1g00297 685 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 239 306 - -
Pumo1g00297 685 MobiDBLite consensus disorder prediction 443 473 - -
Pumo1g00297 685 Pfam Protein tyrosine and serine/threonine kinase 503 652 IPR001245 GO:0004672|GO:0006468
Pumo1g00297 685 SUPERFAMILY Protein kinase-like (PK-like) 502 682 IPR011009 -
Pumo1g00297 685 FunFam Leucine-rich repeat receptor-like protein kinase 485 576 - -
Pumo1g00297 685 Pfam Leucine rich repeat 239 298 IPR001611 GO:0005515
Pumo1g00297 685 Pfam Leucine rich repeat 138 196 IPR001611 GO:0005515
Pumo1g00297 685 SMART LRR_typ_2 333 356 IPR003591 -
Pumo1g00297 685 SMART LRR_typ_2 136 160 IPR003591 -
Pumo1g00297 685 SMART LRR_typ_2 285 309 IPR003591 -
Pumo1g00297 685 Gene3D Transferase(Phosphotransferase) domain 1 494 683 - -
Pumo1g00297 685 Gene3D Ribonuclease Inhibitor 71 233 IPR032675 -
Pumo1g00297 685 SUPERFAMILY L domain-like 114 430 - -
Pumo1g00297 685 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 125 676 - -
Pumo1g00297 685 FunFam Leucine-rich repeat receptor-like protein kinase 69 227 - -
Pumo1g00297 685 Gene3D Ribonuclease Inhibitor 234 416 IPR032675 -
Pumo1g00297 685 PRINTS Leucine-rich repeat signature 285 298 - -
Pumo1g00297 685 PRINTS Leucine-rich repeat signature 163 176 - -
Pumo1g00297 685 FunFam Leucine-rich repeat receptor protein kinase EMS1 307 399 - -
Pumo1g00297 685 Pfam Leucine rich repeat N-terminal domain 74 110 IPR013210 -
Pumo1g00297 685 ProSiteProfiles Protein kinase domain profile. 500 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00297 685 FunFam Os07g0541700 protein 577 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00297 Pumo-Chr1 4570315 4583805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00297 63 685 Receptor kinase-like Gene Family AT3G51740 51.332 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo1g00297 PK_Tyr_Ser-Thr 2.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00297 - - gmx:100810353 1060.44