Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00293 ATGAGAATTTCATCTCGTATAACTCAAACAGAAATCCCAAATATTAGATTCAAGTACCCTGCTATTAGTCCCCGCTCTATCAATAGACGAGTATCCATTTCATTATTCATTTTCCATCCATATCAGATTTTATCAGGCAGGTGCACGCAATACAAATACAAGATTGGCAAGTCTGTTAAGTCAAATTCAATGGTGCATAGAAAAAGACATTTACGTCAACTGAAGCACCCATTCAATGCTTATCCCTTCGAGGCATATTTGTCTGGGTCATGGAAAGCTGTGGAGCTCATAAAAATTGAGTCAGGAACTACGACCCTGCATTTTATAGATAATCAGCATATGACCATTGAGAAAGGCCACTTAGCAGACGTTCGAATAAGTTCAAGGAAAGCTACTTTATCAGATTGCTCCTGCTTTTTACGAACTGGGACTGACATATGTGTTCTCTCAGCCTCTCAGTGTAATGACAATTCAGATGAAATTAGTGCTAATCATGTGTGGATTGATGCTAAAATAAATTCCATAGAGAGAAAACCGCATAATCCAGAGTGCTCATGTCAGTATTATGTAAACTTCTATGTTAATCAAGGTTCACTTGGTACAGAGGTGAGAACTCTTAGTAAGAAGGTTAAAGTAGTTGGAATAAATGAAATTGCCATCCTCCAAAAGCTTGAACGTAACAGTTGTGAAGGCCAATTTTATCGATGGGAATCATCTGAAGACTGCTCCGAAGTGCCACATACTAAATTGTTTTTAGGAAAATTTTTATCTGACCTTTCATGGTTGGTTGTTACATCTGCTATAACGAAGATTCCATTCTGTGCAAGATCTGTGGAAAACAAGATTGTGTATCAAGTTTTAGAGAGTGATGCCACTAGCTCTTCATTAGACATGGATCCTGATATAAGTGTTGTGAACTTTGAAGTGGACGAAGTAGATGGCACGTTAATGGCCGTTGTTTTTGAAATTGAATTATCTGACACTGACACCAATACAAGTGACCATGCACATGATTCCCATTATGATGAAGTGCCATCATCTTATGGTGTTGAGGGCTTACGACGATCCAAACGTAGGAACATAAAACCTGAACGTTACTCTGGTTGTGGTAATGTTTCTGAGATAAAGGTTGGTAATGTTCGAACCTGGCCATACAAGTTAAACAAAAGGAAAGATGATGATGATGATGATGATGAAGAGTCATTGCCATTAGCACAAGAGAATTGTATAGAAGAGGATGGTGACAATAGTCAAAAGGTCAATGAAGTGAGTTCTTGCCGGGAGATGTTAGTGTACCATAGGAGGAAGAGGAACAAAAAGAAGGAATTAAAGTCAGGTGAGGCCAATCAAACTCAACTTGCTAGTGTTCCTCTTCTTGAAGAAGGTGATTCATTAGCCCTTGAGCATCATCCTCTCAATGACAAGGTTACTAGCCCTAAGCTTAAGAGGAAGAAGAGATTGGTTGATCTGGAAGATGATGTAGATTTTGATCCTGGAAGGGAAAGCATAAATTCCAATAAAGGAGTTAGAGGGAAAAGACATGGTTCATGGTATTCAAGAAGCAGAAGCCATGATGCAGAACGCAGTTATAAAGACAGAAGCTTAAATGCAACTGCCTACAAGGAAATGATAGATTCATACTTAAAGGATGTTAATAGAACACCAACAGAAGAGCCACCTGTAATGGACCAGTGGAAGGAAATAAGCAACTTTGGGCAAAAGAAGGAAGCAGAAATACCTCAAAGAGAGGATGAGGAACAAATCTCTGAGATGGATATGTTGTGGAGAGAAATGGAAATGGCACTGACAGCAAGTTATCTTGAAGAAACAGAGGGTTCAAATGGTGCCAATTTTGCTGAGACTACGGAAGAATCTAATCACACTTGTCCACATGATTACAGTTTTTCTGAAGAAATTGGAATTTATTGCTTCAAATGTGGCTTTGTGAAAACCGAGATAAAATATATTACGCCACCCTTCATTGAAACGCAACACTCGGTGAGGCACCAAGAGGAAAAGCAATGCAATGGAAAAGAGTCAAAGGCAAAGGCTAATAAAGATGATGATCGCCATCTGTTCTCAACTCATGCTCCTGGTGATGAACTTATTTCTATGGAACATGACAACGTGTGGAAGTTCATTCCCCAACTTCAAGAAAAGTTGCATGACCACCAACAGAAGGCTTTCCAATTTCTTTGGGAAAATATTGGAGGGTCTATGGAGCCAACACTTACGGATGCAGAATCCAAAAGAAGAGGAGGTTGTGTGATATCTCATACTCCAGGAGCTGGTAAAACTTTTCTTGTTATTGCATTTCTCATTAGCTATTTAAAGCTATTCCCAGGGAAGAAGCCTCTTGTCCTTGCTCCAAAAACCACACTTCACACTTGGCAAAAAGAATTCAACAAATGGGAGAGTTCTATGCCAGTGTATCTGATTCATGGGCGTGGTAGAACTCAGAAAGATACCAAGCAAAATTCAATTGTTCTTCCTGGTTTTCCAAATCCAAATAAAGATGTCAAGCATGTTTTGAACTGCTTGGACATGATAAAAAAGTGGCAAGCACAGCCAAGTGTTTTGATCATGAGTTATACTTCATTTTTAGCATTAATGAGAGAGGGTTCAGAGTTTGCACACAGAAAGTATATGGCTAAAGCATTGAGGGAAGGTCCTGGGATCCTGATACTTGATGAAGGGCACAATCCAAGAAGCACTAAGTCAAGGTTGAGGAAAGGGTTGATGAAAGTGGAAACAGATCTAAGAATACTACTTTCCGGTACATTATTTCAGAACAATTTCTGTGAATACTTCAACACACTTTGCTTGGCAAGACCAAAAACCACTTGGAAAGAGTGGGTTTCTAGCATGATTTTTAGTGAGGCTTTTGAGGAGAACCCTTCACATTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGGAGGACAAGTCTAAATCAATTCATATGATACTAAAGAATGAAAAGGCTTCAACAAACTGA 3012 0.3911 MRISSRITQTEIPNIRFKYPAISPRSINRRVSISLFIFHPYQILSGRCTQYKYKIGKSVKSNSMVHRKRHLRQLKHPFNAYPFEAYLSGSWKAVELIKIESGTTTLHFIDNQHMTIEKGHLADVRISSRKATLSDCSCFLRTGTDICVLSASQCNDNSDEISANHVWIDAKINSIERKPHNPECSCQYYVNFYVNQGSLGTEVRTLSKKVKVVGINEIAILQKLERNSCEGQFYRWESSEDCSEVPHTKLFLGKFLSDLSWLVVTSAITKIPFCARSVENKIVYQVLESDATSSSLDMDPDISVVNFEVDEVDGTLMAVVFEIELSDTDTNTSDHAHDSHYDEVPSSYGVEGLRRSKRRNIKPERYSGCGNVSEIKVGNVRTWPYKLNKRKDDDDDDDEESLPLAQENCIEEDGDNSQKVNEVSSCREMLVYHRRKRNKKKELKSGEANQTQLASVPLLEEGDSLALEHHPLNDKVTSPKLKRKKRLVDLEDDVDFDPGRESINSNKGVRGKRHGSWYSRSRSHDAERSYKDRSLNATAYKEMIDSYLKDVNRTPTEEPPVMDQWKEISNFGQKKEAEIPQREDEEQISEMDMLWREMEMALTASYLEETEGSNGANFAETTEESNHTCPHDYSFSEEIGIYCFKCGFVKTEIKYITPPFIETQHSVRHQEEKQCNGKESKAKANKDDDRHLFSTHAPGDELISMEHDNVWKFIPQLQEKLHDHQQKAFQFLWENIGGSMEPTLTDAESKRRGGCVISHTPGAGKTFLVIAFLISYLKLFPGKKPLVLAPKTTLHTWQKEFNKWESSMPVYLIHGRGRTQKDTKQNSIVLPGFPNPNKDVKHVLNCLDMIKKWQAQPSVLIMSYTSFLALMREGSEFAHRKYMAKALREGPGILILDEGHNPRSTKSRLRKGLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPKTTWKEWVSSMIFSEAFEENPSHWQAEKIEDDILREMVEEDKSKSIHMILKNEKASTN 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00293 1003 Gene3D - 698 990 IPR038718 -
Pumo1g00293 1003 MobiDBLite consensus disorder prediction 329 355 - -
Pumo1g00293 1003 SMART ultradead3 717 953 IPR014001 -
Pumo1g00293 1003 MobiDBLite consensus disorder prediction 329 344 - -
Pumo1g00293 1003 MobiDBLite consensus disorder prediction 495 530 - -
Pumo1g00293 1003 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 120 946 IPR044567 GO:0080188
Pumo1g00293 1003 Pfam SNF2-related domain 736 956 IPR000330 GO:0005524|GO:0140658
Pumo1g00293 1003 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 706 948 IPR027417 -
Pumo1g00293 1003 MobiDBLite consensus disorder prediction 387 421 - -
Pumo1g00293 1003 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 746 946 IPR014001 -
Pumo1g00293 1003 MobiDBLite consensus disorder prediction 667 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00293 Pumo-Chr1 4528013 4535496 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo1g00293 SNF2_N 1.1e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00293 K10875 - gmx:100781856 1455.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00293 1 4528013 4535496 Pumo1g00293 1 4528013 4535496 ECH
Pumo1g00293 1 4528013 4535496 Pumo9g02280 9 55965492 55968855 PCT