Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00289 ATGGATTCCGACTTCCCCAACAAAGCGTTAACGAGCACGCGTTTTTCCGACCTGAATCCGCCACTCTCCGAACCGGTTCTCCAAGCCCTATCACAGTCTGGCTTCGAGTTCTGCACGCCGGTCCAAGCCGCCACCATTCCTTTGCTCTGCAGCTTCAAGGACGTCGCCGTCGACGCCGCCACCGGTTCAGGCAAAACCCTAGCTTTTCTCGTTCCTCTCGTCGAGATTCTGCGCCGCTCCTCTTCTCATCCCAAGCCTCACCAGGTGCTAGGAATAATTATATCCCCTACAAGGGAGCTATCAACTCAAATATATAATGTTGCACAACCTTTCATTTCGACATTGGTGAATGTTAAATCCATGCTCCTCGTTGGTGGAGTAGAAGTAAAAGCAGACATAAAGAAAATAGAGGAGGAAGGAGCAAACATATTGATTGGCACACCTGGGCGGCTATATGACATAATGAATCGGATGGATGTCTTGGATCTTAAAAACCTTGAGATTTTGATTTTGGATGAGGCTGATAGACTGTTAGATATGGGATTCCAGAAGCAGATAACTTCTATTATATCTCTCTTGCCTAAGCTTCGTAGAACTGGTCTGTTTTCTGCTACTCAAACTGAGGCTATTGAAGAGCTTTCCAAGGCAGGATTGAGGAACCCTGTGAGAGTTGAAGTTCGAGCAGAAACAAAATCAGAAAATGGTCCTGCATCATCAAAACAACTAGAATCTTCCAAAACACCTTCAGGACTTCACATTGAGTACTTGGAATGCGAGGCAGATAAGAAGACATCACAGCTAGTAGATATCCTTGTTAAGAATTGCTCAAGAAAAATTATAATATATTTCATGACTTGTGCTTGTGTTGATTATTGGGGAGCTGTCCTTCCTTGTCTTTCTGTTTTAAAAGGCTTCTCCTTGATTCCCCTACATGGAAAAATGAAGCAGTCTGCCAGGGAGAAAGCACTAGCTTCATTTACATCCCTTTCGAATGGAATTCTTCTGTGTACGGATGTTGCAGCACGTGGACTTGACATACCAGGTGTAGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCATACATAGAGTAGGTCGAACTGCTCGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCCTGCATATAAGAAGAGTTCCTCTTCAAGAGAGATTATGTTCTGATGATGCATCTGATGTTGTTCCTCAGATTCGTTCTGCTGCAAAAAAAGATCGTGATGTCATGGAAAAGGGAATCAAGGCTTTTGTCTCTTACATCCGTGCTTATAAAGAGCATCACTGCTCCTATATTTTTAGGTGGAAAGAACTTGAAATTGGCAAATTGGCCATGGGATATGGCTTGTTACAACTTCCTGCAATGCCAGAGGTAAAACACCACTCACTTTCCACTGATGGATTTGAACCAGTTGAAGATGTCAATTTGGAGGACATTAAGTACAGGGATAAATCACGGGAGAAACAAAGGAAGAAGAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTCAAAAACCGAACAAAACCCCAAATGCACCCACTGTCATGCGGAAGAAAACAGCTCGACAGAGACGTGCTCAGCAGACAATGGAAGATGAGGAAGAGTTGATGCAAGAATACCGCTTGTTGAAGAAATTGAAGAAAGGGACCATAGATGAGAATGAATATGCCAAGTTGACAGGCACTGAGGAATTACTTTGA 1770 0.4316 MDSDFPNKALTSTRFSDLNPPLSEPVLQALSQSGFEFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFLVPLVEILRRSSSHPKPHQVLGIIISPTRELSTQIYNVAQPFISTLVNVKSMLLVGGVEVKADIKKIEEEGANILIGTPGRLYDIMNRMDVLDLKNLEILILDEADRLLDMGFQKQITSIISLLPKLRRTGLFSATQTEAIEELSKAGLRNPVRVEVRAETKSENGPASSKQLESSKTPSGLHIEYLECEADKKTSQLVDILVKNCSRKIIIYFMTCACVDYWGAVLPCLSVLKGFSLIPLHGKMKQSAREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEESYVEFLHIRRVPLQERLCSDDASDVVPQIRSAAKKDRDVMEKGIKAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPAMPEVKHHSLSTDGFEPVEDVNLEDIKYRDKSREKQRKKNLQAKKEAKEKEPKPQKPNKTPNAPTVMRKKTARQRRAQQTMEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00289 589 MobiDBLite consensus disorder prediction 498 528 - -
Pumo1g00289 589 SMART DUF4217_3 413 476 IPR025313 -
Pumo1g00289 589 Coils Coil 503 523 - -
Pumo1g00289 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Pumo1g00289 589 CDD DEADc_DDX55 26 224 - -
Pumo1g00289 589 Gene3D - 3 227 IPR027417 -
Pumo1g00289 589 Pfam DEAD/DEAH box helicase 39 212 IPR011545 GO:0003676|GO:0005524
Pumo1g00289 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Pumo1g00289 589 SMART helicmild6 293 375 IPR001650 -
Pumo1g00289 589 Pfam Domain of unknown function (DUF4217) 416 474 IPR025313 -
Pumo1g00289 589 CDD SF2_C_DEAD 254 384 - -
Pumo1g00289 589 FunFam RNA helicase 9 227 - -
Pumo1g00289 589 Gene3D - 254 486 IPR027417 -
Pumo1g00289 589 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Pumo1g00289 589 SMART ultradead3 34 254 IPR014001 -
Pumo1g00289 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Pumo1g00289 589 PANTHER RNA HELICASE 12 520 - -
Pumo1g00289 589 MobiDBLite consensus disorder prediction 498 557 - -
Pumo1g00289 589 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Pumo1g00289 589 Coils Coil 539 569 - -
Pumo1g00289 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00289 Pumo-Chr1 4489137 4494604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00289 22 402 Eukaryotic Initiation Factors Gene Family AT3G13920 29.581 3.60e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00289 K14809 - gmx:100801482 1077.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00289 1 4489137 4494604 Pumo1g00289 1 4489137 4494604 ECH