Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00287 ATGGCTGGGAATTCTCCATGTGCTTCATGCAAGCTGCTGAGACGCAGGTGTACCAAGGACTGCATCTTTGCTCCTTATTTCCCTTCCAATGATCCTCAAAAGTTCGCCTTAGTTCACAAGGTTTTTGGTGCTAGCAATGTTAGCAAAATGCTTCAGGAACTTTCAGTTCACCAGAGAGCTGATGCTGTGAGTAGTTTGGTGTATGAAGCACATGCAAGAGTTCGGGACCCGGTGTATGGTTGTGTTGGAGCCATATCCTATCTGCAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCCCAAGCAGAGATACTCTGCATCCAGATGCAACAGGAGCCAGTGATACCAAACCCAGAAATGGAAGACCTAGATCAGAAATCTTTCCTTCTCCAAAATGAACTCCCTCAATACCTCAACTATGCCTCTTCTAGCAATGTAATTTATGATTCTCTCTCAAGAGAGAGCATTTTTGGACATGACATGGTTTCTTGA 498 0.4478 MAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELSVHQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQEPVIPNPEMEDLDQKSFLLQNELPQYLNYASSSNVIYDSLSRESIFGHDMVS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00287 165 Coils Coil 85 105 - -
Pumo1g00287 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 121 - -
Pumo1g00287 165 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Pumo1g00287 165 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00287 Pumo-Chr1 4469094 4469949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00287 3 132 AS2 family AT2G30130 79.699 2.79e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo1g00287 LOB 2.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00287 - - gmx:121173085 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00287 1 4469094 4469949 Pumo9g02284 9 56020979 56021842 ECH
Pumo1g00287 1 4469094 4469949 Pumo1g00287 1 4469094 4469949 ECH
Pumo1g00287 1 4469094 4469949 Pumo9g02284 9 56020979 56021842 PCT