Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00284 ATGGCTCCGAACCTGGAATGTCGTATGTACGAGGCGAAGTACCCGGAGGTGGACATGGCGGTGATGATACAGGTGAAGAACATAGCGGACATGGGCGCGTACGTGTCGCTGCTGGAGTACAACAACATCGAGGGCATGATCTTGTTCTCGGAGCTCTCTCGCCGTCGGATTCGGAGTGTGAGCAGTCTCATCAAGGTGGGCCGCATCGAGCCCGTGATGGTCCTCCGTGTGGACAAGGAAAAGGGATACATCGATCTCAGCAAGCGCAGGGTCTCCGAAGAGGACATCCAGGCCTGCGAGGAGAGGTACAACAAGAGCAAGCTCGTCCACTCCATCATGCGCCACGTCGCCGAAACCCTCAACATCGATTTGGAGGAGCTCTATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTCGAGGCTTTCAAAATAATCGTGACCGATCCTGATTCTGTTTTGAATACTCTCACTCGTGAAGTCAAGGAAGTTGGCCCTGATGGGCAAGAGGTGACTAGGGTGGTGCCAGCTGTATCAGAAGAAGTGAAGGATTCTCTTGTGAAGAATATTAGAAGACGAATGACCCCCCAACCCTTGAAAATTAGGGCAGATATTGAAATGAAATGTTTTCAGTTTGATGGAGTTCTTCACATTAAGGAGGCAATGCGTAAGGCTGAAGCTGCTGGAAACGATGACTGCCCCGTCAAAATTAAACTTGTTGCTCCCCCACTTTATGTTCTTACCACCCAGACACTGGACAAGGAGCAAGGAATATTGGTTCTCAACAATGCCATTGCTTCTTGCACTGAAGCAATAGAACAACACAAGGGTAAACTTGTGGTTAAGGAGGCAGCTAGAGCAGTGAGTGAACGTGACGATAAATTGCTTGCTGAGCACATGGCTAAGCTACGCCAAGATAATGAGGAGGTCAGTGGTGATGAAGACAGTGAGGAGGAAGAAGATACAGGAATGGGCGAGGTTGATGTGGATAATGGTGCCGGGATAACGGAGTGA 1023 0.4936 MAPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLNIDLEELYIHIGWPLYRKYGHAFEAFKIIVTDPDSVLNTLTREVKEVGPDGQEVTRVVPAVSEEVKDSLVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGILVLNNAIASCTEAIEQHKGKLVVKEAARAVSERDDKLLAEHMAKLRQDNEEVSGDEDSEEEEDTGMGEVDVDNGAGITE 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00284 340 SUPERFAMILY Nucleic acid-binding proteins 7 89 IPR012340 -
Pumo1g00284 340 CDD S1_IF2_alpha 15 90 IPR044126 GO:0003723
Pumo1g00284 340 Coils Coil 303 323 - -
Pumo1g00284 340 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 1 330 IPR011488 GO:0003723|GO:0003743
Pumo1g00284 340 FunFam Eukaryotic translation initiation factor 2 subunit 1 202 324 - -
Pumo1g00284 340 SMART S1_6 16 89 IPR022967 -
Pumo1g00284 340 Pfam Eukaryotic translation initiation factor 2 alpha subunit 127 257 IPR011488 GO:0003723|GO:0003743
Pumo1g00284 340 SUPERFAMILY eIF-2-alpha, C-terminal domain 200 316 IPR024055 -
Pumo1g00284 340 Gene3D EIF_2_alpha 202 324 IPR024055 -
Pumo1g00284 340 FunFam Eukaryotic translation initiation factor 2 subunit alpha 92 196 - -
Pumo1g00284 340 Gene3D - 3 91 IPR012340 -
Pumo1g00284 340 MobiDBLite consensus disorder prediction 303 340 - -
Pumo1g00284 340 Gene3D Translation initiation factor 2; subunit 1; domain 2 92 196 IPR024054 -
Pumo1g00284 340 MobiDBLite consensus disorder prediction 313 329 - -
Pumo1g00284 340 FunFam Eukaryotic translation initiation factor 2 subunit alpha 4 91 - -
Pumo1g00284 340 ProSiteProfiles S1 domain profile. 18 89 IPR003029 GO:0003676
Pumo1g00284 340 SUPERFAMILY eIF2alpha middle domain-like 91 196 IPR024054 -
Pumo1g00284 340 Pfam S1 RNA binding domain 15 89 IPR003029 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00284 Pumo-Chr1 4437837 4441154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00284 2 340 Eukaryotic Initiation Factors Gene Family AT5G05470 81.765 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00284 K03237 - gmx:100815696 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00284 1 4437837 4441154 Pumo1g00284 1 4437837 4441154 ECH