Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00274 ATGCAAGTGAGAGCCATGAAGGGTTATGAGCCCCGTTCAAGCTCTTCATGTGCAGCTTGCAAGTTATTGAAGAGAAGATGCATACCGAATTGTATTTTTGCACCTTACTTTAGGTCTGATGAGTGCAAAAAGTTTGCCAAAGTGCACAAGGTGTTTGGAGCCAGCAATGTGAGCAAGATCCTGATTGAAGTGCCAGAAGAGCAGAGAGAGGACACAGTGAATTCTCTGGCATATGAGGCTGAGGCAAGGCTGAGAGACCCGGTTTATGGATGCATTGGTGCCATAGCTCTGTTGCAAAGGAAGATGGTGGAGCTTCAACATGATCTGGCCATTGCTAAGGATCGTCTTGCACGTTGTCACGCTGCTGCTACTGCTGCTGCTACTACTACTATCCCTTCTCCAGCTGATATCTTGCATGCCCATGTTAGCTTGCCCCCATTCCCTGACTTTTGCACTTCTTCAACTGATTTCAATGATATCTTCTGCCACAGTTCTTCATCTCAATTATTGAGCCGACATGAAACCGTGGATGATTTCAATCAAATCCCATATATATTTTAA 561 0.451 MQVRAMKGYEPRSSSSCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARCHAAATAAATTTIPSPADILHAHVSLPPFPDFCTSSTDFNDIFCHSSSSQLLSRHETVDDFNQIPYIF 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00274 186 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
Pumo1g00274 186 Coils Coil 95 115 - -
Pumo1g00274 186 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Pumo1g00274 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00274 Pumo-Chr1 4332436 4333495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00274 6 150 AS2 family AT3G11090 66.897 5.49e-65 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo1g00274 LOB 1.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00274 - - gmx:100791250 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00274 1 4332436 4333495 Pumo1g00274 1 4332436 4333495 ECH