LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo1g00273	ATGTCCAACCCAGATTCTCGATCATTCAGTTGGCACTACACAGAACTCGATGACAGAGACCTCGAGATCCGAGGAAGGACTTTGTTCTTTGTCATCGTACTCTTCTCCATTATCCTTCTCGTCACCGTTCTCTTCATCTACACGCGCTGGGTTTGCCGCCACCAGGGACGCCTCCCCACCACCGCTTTCTCCGCCGCTGCAGTCCACGCGCCGCCTCTCGCGCCGCCTCAGGGACTGGACCCCGCTTCCATCAAGAAACTGCCCATAATCCTCCACCACGCGCCGTCGGACCGCGACGAAAGCGCGTGGGACGAGAGTGAGTGCTGTATCTGCCTGGGCGAGTTCAGAGACGGAGAGAAAGTGAAGGTTTTGCCGGCATGTGACCACTATTTCCATTGTGATTGCGTTGATAAGTGGCTCATTCACCACTCTAGTTGCCCACTTTGCAGAGCTTCTCTCAAGGTTGAATCTTCCTTCCCTAAGATTTTGATTCAGGAACCACCCCTTAGAATTGACTTCCAGTTCTAG	528	0.5398	MSNPDSRSFSWHYTELDDRDLEIRGRTLFFVIVLFSIILLVTVLFIYTRWVCRHQGRLPTTAFSAAAVHAPPLAPPQGLDPASIKKLPIILHHAPSDRDESAWDESECCICLGEFRDGEKVKVLPACDHYFHCDCVDKWLIHHSSCPLCRASLKVESSFPKILIQEPPLRIDFQF	175

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo1g00273	175	SMART	ring_2	108	149	IPR001841	-
	Pumo1g00273	175	SUPERFAMILY	RING/U-box	99	156	-	-
	Pumo1g00273	175	FunFam	RING-H2 finger protein ATL66	71	155	-	-
	Pumo1g00273	175	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	73	156	IPR013083	-
	Pumo1g00273	175	Pfam	Ring finger domain	107	150	IPR001841	-
	Pumo1g00273	175	CDD	RING-H2_EL5-like	107	150	-	-
	Pumo1g00273	175	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL42	27	157	-	-
	Pumo1g00273	175	ProSiteProfiles	Zinc finger RING-type profile.	108	150	IPR001841	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo1g00273	Pumo-Chr1	4307738	4309246	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo1g00273	11	158	C3H Transcription Factor Family	AT3G11110	43.333	8.80e-36	120

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo1g00273	-		-	gmx:100803278	352.058

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo1g00273	1	4307738	4309246	Pumo9g02302	9	56201088	56201937	PCT