Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00272 ATGGGAGATAAAAGGCTCAGAAATCATGGAAGAAACTTTAGAATGGTTTCCATTGTGACTATGGAAAATTACTATGATTCTGGCTGGCACATGGGCACCAGCTGGGCTCAATGCAGTGATCATTCTTCTTCCTTTGCAGTACCTACACAAATACTCCCTCATGTCACTGACTCTGCCTCTCTTCAATTTGGTGAGTTCCACTCATGGCCACTTCCCATTGAAGGGGCTGCAGAAGAGAGAGCAATAAGTGCTTCCAAGAGTCACAGTCAAGCTGAGAAAAGGCGCAGAGACAGGATCAATGCACAGCTTGCAACTCTTAGAAAACTTATTCCCAAGTCTGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGATAGACCAAGTAAAAGATCTAAAGAGAAAAGCCATGGATGTTAGCAGAGCCTTCACAGTTCCAACTGAAATTGATGAAGTATCAATTGACTATGACCATGTTCAAGGTGAAAGCTGTACTAAAGTGAACAAATTGAAGGACAATATTGTGATCAAAGCTTCTGTTTGCTGCGATGATCGACCAGAACTGTTCCCTGAACTCATCCAAGTCCTCAAAGGCTTGAGACTCACAGCAGTTAAAGCTGACATAGCCAGTGTTGGTGGCAGAATCAAAAGCATATTGGTCCTTTGTTCTAAGGATAGTGAAGAGGGTGTTTGCCTTACCACTCTCAAACAGTCCCTCAAATCTGCTGTCACCAAAATTGCTTCATCATCCATGGCATCTAGTTGTCCCACTAGAAGTAAGAGGCAGAGATTCTTCTTGCCTTCTCACTGCCTACAGTAA 819 0.4335 MGDKRLRNHGRNFRMVSIVTMENYYDSGWHMGTSWAQCSDHSSSFAVPTQILPHVTDSASLQFGEFHSWPLPIEGAAEERAISASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDQVKDLKRKAMDVSRAFTVPTEIDEVSIDYDHVQGESCTKVNKLKDNIVIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSEEGVCLTTLKQSLKSAVTKIASSSMASSCPTRSKRQRFFLPSHCLQ 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00272 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 132 IPR011598 GO:0046983
Pumo1g00272 272 Gene3D - 77 141 IPR036638 GO:0046983
Pumo1g00272 272 CDD bHLH_AtAIG1_like 78 157 - -
Pumo1g00272 272 PANTHER TRANSCRIPTION FACTOR BHLH30 74 268 IPR045847 GO:0003700|GO:0006355
Pumo1g00272 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 135 IPR036638 GO:0046983
Pumo1g00272 272 Pfam Helix-loop-helix DNA-binding domain 86 132 IPR011598 GO:0046983
Pumo1g00272 272 SMART finulus 89 138 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00272 Pumo-Chr1 4296264 4298190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00272 21 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.424 6.29e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo1g00272 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00272 - - gmx:100799687 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00272 1 4296264 4298190 Pumo1g00272 1 4296264 4298190 ECH
Pumo1g00272 1 4296264 4298190 Pumo9g02305 9 56220051 56221919 PCT