Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00269 ATGCTCTGCGAGATCTTCAGTCGCCGATTGGAAAAGATGAGTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCCGGAATCATGGCCGATTCCAAGGAGAAGAATCGCAAATTTGTGGAGACCATTGAACTCCAAATTGGGTTGAAAAACTACGATCCACAGAAGGACAAGCGTTTCAGTGGCTCTGTCAAGTTGCCCCACATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCAGAGAAGATAGGACTGGACTGGATGGATGTGGAAGCCTTGAAGAAGCTAAACAAAAATAAGAAGTTGGTGAAGAAACTAGCTAAGAAATACCATGCCTTTTTAGCTTCTGAAGCAGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTAACGAGTCTAAGGCCATGGTCAAATTTCAACTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTGGGCAATGTTAGCATGGAGGAAAAGCAAATCTTCCAAAATGTTCAATTGAGTGTCAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATGTGAGTAGTAGTCCACTCTCATAG 657 0.4384 MLCEIFSRRLEKMSKLQSDALREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQETLESKVNESKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSSSPLS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00269 218 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 6 218 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Pumo1g00269 218 FunFam Ribosomal protein 149 216 - -
Pumo1g00269 218 Pfam Ribosomal protein L1p/L10e family 34 214 IPR028364 -
Pumo1g00269 218 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 23 203 - -
Pumo1g00269 218 SUPERFAMILY Ribosomal protein L1 33 214 IPR023674 -
Pumo1g00269 218 FunFam Ribosomal protein L10a 13 131 - -
Pumo1g00269 218 Gene3D - 77 166 IPR016095 -
Pumo1g00269 218 Gene3D - 33 214 - -
Pumo1g00269 218 CDD Ribosomal_L1 21 214 IPR028364 -
Pumo1g00269 218 ProSitePatterns Ribosomal protein L1 signature. 128 147 IPR023673 -
Pumo1g00269 218 FunFam Ribosomal protein 77 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00269 Pumo-Chr1 4269548 4272056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00269 13 212 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 89.000 5.41e-117 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00269 K02865 - gmx:100808580 372.859