Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo1g00269 | ATGCTCTGCGAGATCTTCAGTCGCCGATTGGAAAAGATGAGTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCCGGAATCATGGCCGATTCCAAGGAGAAGAATCGCAAATTTGTGGAGACCATTGAACTCCAAATTGGGTTGAAAAACTACGATCCACAGAAGGACAAGCGTTTCAGTGGCTCTGTCAAGTTGCCCCACATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCAGAGAAGATAGGACTGGACTGGATGGATGTGGAAGCCTTGAAGAAGCTAAACAAAAATAAGAAGTTGGTGAAGAAACTAGCTAAGAAATACCATGCCTTTTTAGCTTCTGAAGCAGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTAACGAGTCTAAGGCCATGGTCAAATTTCAACTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTGGGCAATGTTAGCATGGAGGAAAAGCAAATCTTCCAAAATGTTCAATTGAGTGTCAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATGTGAGTAGTAGTCCACTCTCATAG | 657 | 0.4384 | MLCEIFSRRLEKMSKLQSDALREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQETLESKVNESKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSSSPLS | 218 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo1g00269 | 218 | PIRSF | RPL1p_RPL1a_RPL10e_RPL1o | 6 | 218 | IPR002143 | GO:0003723|GO:0003735|GO:0006412|GO:0015934 | |
Pumo1g00269 | 218 | FunFam | Ribosomal protein | 149 | 216 | - | - | |
Pumo1g00269 | 218 | Pfam | Ribosomal protein L1p/L10e family | 34 | 214 | IPR028364 | - | |
Pumo1g00269 | 218 | PANTHER | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER | 23 | 203 | - | - | |
Pumo1g00269 | 218 | SUPERFAMILY | Ribosomal protein L1 | 33 | 214 | IPR023674 | - | |
Pumo1g00269 | 218 | FunFam | Ribosomal protein L10a | 13 | 131 | - | - | |
Pumo1g00269 | 218 | Gene3D | - | 77 | 166 | IPR016095 | - | |
Pumo1g00269 | 218 | Gene3D | - | 33 | 214 | - | - | |
Pumo1g00269 | 218 | CDD | Ribosomal_L1 | 21 | 214 | IPR028364 | - | |
Pumo1g00269 | 218 | ProSitePatterns | Ribosomal protein L1 signature. | 128 | 147 | IPR023673 | - | |
Pumo1g00269 | 218 | FunFam | Ribosomal protein | 77 | 166 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo1g00269 | Pumo-Chr1 | 4269548 | 4272056 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo1g00269 | 13 | 212 | Cytoplasmic Ribosomal Protein Gene Family | AT1G08360 | 89.000 | 5.41e-117 | 330 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo1g00269 | K02865 | - | gmx:100808580 | 372.859 |