LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo1g00269	ATGCTCTGCGAGATCTTCAGTCGCCGATTGGAAAAGATGAGTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCCGGAATCATGGCCGATTCCAAGGAGAAGAATCGCAAATTTGTGGAGACCATTGAACTCCAAATTGGGTTGAAAAACTACGATCCACAGAAGGACAAGCGTTTCAGTGGCTCTGTCAAGTTGCCCCACATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCAGAGAAGATAGGACTGGACTGGATGGATGTGGAAGCCTTGAAGAAGCTAAACAAAAATAAGAAGTTGGTGAAGAAACTAGCTAAGAAATACCATGCCTTTTTAGCTTCTGAAGCAGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTAACGAGTCTAAGGCCATGGTCAAATTTCAACTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTGGGCAATGTTAGCATGGAGGAAAAGCAAATCTTCCAAAATGTTCAATTGAGTGTCAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATGTGAGTAGTAGTCCACTCTCATAG	657	0.4384	MLCEIFSRRLEKMSKLQSDALREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQETLESKVNESKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSSSPLS	218

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo1g00269	218	PIRSF	RPL1p_RPL1a_RPL10e_RPL1o	6	218	IPR002143	GO:0003723\|GO:0003735\|GO:0006412\|GO:0015934
	Pumo1g00269	218	FunFam	Ribosomal protein	149	216	-	-
	Pumo1g00269	218	Pfam	Ribosomal protein L1p/L10e family	34	214	IPR028364	-
	Pumo1g00269	218	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	23	203	-	-
	Pumo1g00269	218	SUPERFAMILY	Ribosomal protein L1	33	214	IPR023674	-
	Pumo1g00269	218	FunFam	Ribosomal protein L10a	13	131	-	-
	Pumo1g00269	218	Gene3D	-	77	166	IPR016095	-
	Pumo1g00269	218	Gene3D	-	33	214	-	-
	Pumo1g00269	218	CDD	Ribosomal_L1	21	214	IPR028364	-
	Pumo1g00269	218	ProSitePatterns	Ribosomal protein L1 signature.	128	147	IPR023673	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo1g00269	Pumo-Chr1	4269548	4272056	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo1g00269	13	212	Cytoplasmic Ribosomal Protein Gene Family	AT1G08360	89.000	5.41e-117	330

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo1g00269	K02865		-	gmx:100808580	372.859

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