Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00264 ATGCCGACGCCCGTGGCAGCCGCGCGCCAATGCCTAACCCCCGACGCCGCCCGCGCCCTCGACGAGGCAGTCTCGGTGGCGCGGCGACGCGGCCACGCCCAGACGACCTCCCTCCACGCAGTCTCCGCCCTCCTCTCCCTCCCGTCCTCCTCCCTCCTCCGCGACGCCTGCTCCCGCGCCCGCAACTGTGCCTACTCCCCTCGGCTCCAGTTCAAGGCCCTGGACCTCTGCCTCTCCGTCTCCCTCGACCGCGCTCCATCCTCCCACAACCACTCCTCCGCCGACCACGACCCTCCCGTCTCCAACTCCCTCATGGCCGCCATCAAACGCTCCCAGGCCAACCAGCGCCGCCACCCCGACAATTTCCACTTCTACCACCACCAGACGCAACAGCAACAGCAGCAGCAACCGTTCTCTGTTTCCTCTGTCAAAGTAGAGCTTCAGCATTTGATCTTGTCAATCCTAGACGACCCGGTGGTCAGTCGCGTTTTCGCCGAGGCCGGCTTCCGGAGCTCCGATATTAAGCTCGCCATCCTCCGCCCTCTCCGCCCCCGCGGCCCCCCGATTTTCCTCTGCAATTTGTCCGAGCCGCCGCGGAGGTTCCCCTTCTTCTTCGGCGGTGGTGGTGGTGGCGACGAGGACGGCGGCGGCGGCGGCGGCGAGAATTTCCGGCGAATCGGGGAGGTTCTGGTCCGGAGCCGGGGGCGGAACCCGCTGCTACTGGGCGCGTGCGCGAACGACGCCCTCCGGAGCTTCTCGGAGGCGGTGGAGAAGCGGAGGGAGGGGGTTCTGCCGGTGGAGCTGGGTGGGCTGCGCGTGGTTTGCATTGCGGAGGAGGTGGCGAGTGGGGATGCGGAGGTGGTGAGTAAGCGCGTGAGGGAGATTGGGAATTTGGCGGAGCAGTGTGTGGGGCCCGGTGTTGTGGTGAGCTTCGGGGACTTGAAGGGTTTTGTGAGCGATGAAGAAGGTGGTGAGGGTCTGAGGAGTGTGGTTGGGGAATTGGCAAAGTTGTTGCAGCTTCATTTTGATAAGTTTTGGTTGATGGGTGCTGCGGCTAGTTACGAGAGTTACTTGAAATTCGTCGGCAAGTTTCCTTCTATTGAGAAAGACTGGGATTTGCAGCTTCTGCCTATTACCTCTGTTAAGCCTTCTGAATCCTATCATCGCCCCAGGTCCAGCTTAATGGATTCATTTGTACCGTTTGGTGGCTTTTTTTCGTCACAGTCTGATTTGAAAGCTCCACCGAATGGCTCGTTTTATTGTGTTCCCCACTCTCACCAGTGTGGGGAAAGGTGTGAACATGAAGTCCATGCTGCTTCGAAGGAAAGGTTTTCTGCTTCTTCAGCTGCTGATCCGCATCAATCTAACTTGCCTCCATGGCTGCAGATTGCAGAATTTGGCACGGCAAAAGGGTTGAATGTTAAGACCAAAGATAATGGTGTTTTGCTCGATAGTAGTGAATCCGGGCCACTGCATAAGAACTTAGACAAGATATGCCAGCATCTGCACCAGCGAGATGCAAATACTTTTCCAACTGTTGTGGGGTTTCATTGTGGTGCTGACAAGAAAAAAGAAGATGCTGACAATTGCAGCAGCAAATCACCTAGTGAATACATCAATCTCAACTCCCATGTACCTGTTGGCGTGCAAATGATGCCTACATCACAATCAAGTAGTCCTTTTCCTGCAGTTTTCAAGGCAAAGCAGGAGAAATATACTTCAAAACTTGCTGAGATGTTCCAGAAAGTGGAAGATCATGAGTCAGGTGACCGAAGATCATGCAACATGTCCAATTCAAGTGTGTGTGATGGTAGTAGTCAAATGTCTCCCACATCTGTAACTTCTGTAACCACAGATCTTGGGTTAGGAATATGCTCTTCTCCTACCAGCAACAAATTGAAGAAACCTGCTGTTCAATATACAATGGAGCCTCCAAAGGAAATCCCAAGTCGATTTTCTCCAAACTTTAATTTGGCTGATGGGAATATCTTGAAGCATCCATCCCAGTCTTCATCCTGCTTAAGTTTTGACTATTGTGGACAAGTTGATGCAAAAAATCCCAAAATTCTTTTTGAAGCTCTTTCCAAGGAGGTAAGCTGGCAAGATGAAGCTTTACGGGCTATCGTCAAAACAATAGTTTGCAGCCCAACAAAAAGGGTTACACACCGTGGAGCAAATCAGCCTGGAGACATCTGGATGAATTTTGTTGGACCTGATAGACTTGGTAAAAAGAAAGTTGCTGTTTCTCTAGCTGAGTTATTGTATGGGAGCCGGGAAAGCTTTATTTTTGTGGATCTAAGTTCTGAAGAAATGAAAGGATGCAATGTGAAATTCAGAGGGAAGACTACCCTTGATTTTATTGTAGGGGAGTGTTGCAAGAAACCCTTGTCTGTGGTTTTCCTTGAAAATGTAGACAATGCAGATATTCTAGCTCAAAATAGTTTGTCTCAAGCCATCAAGACAGGAAAAATTACAGACTCACATGGACGAGAAGTTAGTGTAAACAATACAATGTTTGTTTTTTCTTTCTCAGATTACCAAAGTAGTTCGATGCCAACAAGGGAACCTTCCAACTATTCTGAGGAAAAAATACTGAGGGCAAACGGGGGAGGTATCAAGATAAAAGTTGAACATGTGATTGGAGACATCAGAAGCCAAAGCATCAGTGTAACTAACAATTCAATAGATGCTATTCCTAATCTAAATTTCCTAAACAAACGAAAGTTGATTGGTGACAATGAATTTCATGATCAACATTTACTCTCTGATACAGCTAAAAGGGCACATACAACATCAAATTGGCTGTTAGATTTGAATCTCCCAGCCGAAGAGAATGAACAGAAACAAACAAATGATGCAAACTCTGAACATGTCTCAACAGAGAACCAAAACCTTTGGTTGCAAGATTTGTGTGATCTGGTTGATGAAACAGTTGTTTTTAAACCTTATGATTTTGATGCACTTGCGGATAGAGTGTTGAAAGTGATCAGAAGTAACTTCAACAAAATTCTTGGATCCGAGTGTGCATTGCAGATCCAGACAGAAGTCATAGACCAATTTCTTGCAGCTCAATATGTCTCAGACAGGGATACGGAGGTGGAGAACTGGGTGGAGGAAGTTCTATGTGAAGGATTTACAGAAATACAGAGAAGCTGTTACTAG 3162 0.4899 MPTPVAAARQCLTPDAARALDEAVSVARRRGHAQTTSLHAVSALLSLPSSSLLRDACSRARNCAYSPRLQFKALDLCLSVSLDRAPSSHNHSSADHDPPVSNSLMAAIKRSQANQRRHPDNFHFYHHQTQQQQQQQPFSVSSVKVELQHLILSILDDPVVSRVFAEAGFRSSDIKLAILRPLRPRGPPIFLCNLSEPPRRFPFFFGGGGGGDEDGGGGGGENFRRIGEVLVRSRGRNPLLLGACANDALRSFSEAVEKRREGVLPVELGGLRVVCIAEEVASGDAEVVSKRVREIGNLAEQCVGPGVVVSFGDLKGFVSDEEGGEGLRSVVGELAKLLQLHFDKFWLMGAAASYESYLKFVGKFPSIEKDWDLQLLPITSVKPSESYHRPRSSLMDSFVPFGGFFSSQSDLKAPPNGSFYCVPHSHQCGERCEHEVHAASKERFSASSAADPHQSNLPPWLQIAEFGTAKGLNVKTKDNGVLLDSSESGPLHKNLDKICQHLHQRDANTFPTVVGFHCGADKKKEDADNCSSKSPSEYINLNSHVPVGVQMMPTSQSSSPFPAVFKAKQEKYTSKLAEMFQKVEDHESGDRRSCNMSNSSVCDGSSQMSPTSVTSVTTDLGLGICSSPTSNKLKKPAVQYTMEPPKEIPSRFSPNFNLADGNILKHPSQSSSCLSFDYCGQVDAKNPKILFEALSKEVSWQDEALRAIVKTIVCSPTKRVTHRGANQPGDIWMNFVGPDRLGKKKVAVSLAELLYGSRESFIFVDLSSEEMKGCNVKFRGKTTLDFIVGECCKKPLSVVFLENVDNADILAQNSLSQAIKTGKITDSHGREVSVNNTMFVFSFSDYQSSSMPTREPSNYSEEKILRANGGGIKIKVEHVIGDIRSQSISVTNNSIDAIPNLNFLNKRKLIGDNEFHDQHLLSDTAKRAHTTSNWLLDLNLPAEENEQKQTNDANSEHVSTENQNLWLQDLCDLVDETVVFKPYDFDALADRVLKVIRSNFNKILGSECALQIQTEVIDQFLAAQYVSDRDTEVENWVEEVLCEGFTEIQRSCY 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00264 1053 ProSiteProfiles Clp repeat (R) domain profile. 8 187 IPR004176 -
Pumo1g00264 1053 Pfam Clp amino terminal domain, pathogenicity island component 145 179 IPR004176 -
Pumo1g00264 1053 SUPERFAMILY Double Clp-N motif 12 122 IPR036628 -
Pumo1g00264 1053 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1047 - -
Pumo1g00264 1053 MobiDBLite consensus disorder prediction 593 608 - -
Pumo1g00264 1053 Gene3D - 10 181 IPR036628 -
Pumo1g00264 1053 Gene3D - 671 884 IPR027417 -
Pumo1g00264 1053 MobiDBLite consensus disorder prediction 584 608 - -
Pumo1g00264 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 997 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00264 Pumo-Chr1 4228464 4233634 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00264 - - gmx:100800606 1852.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00264 1 4228464 4233634 Pumo1g00264 1 4228464 4233634 ECH
Pumo3g03038 3 55134718 55139571 Pumo1g00264 1 4228464 4233634 ECH
Pumo1g00639 1 9685657 9687012 Pumo1g00264 1 4228464 4233634 ECH
Pumo9g01553 9 43619834 43621156 Pumo1g00264 1 4228464 4233634 ECH
Pumo1g00264 1 4228464 4233634 Pumo1g00639 1 9685657 9687012 ECH
Pumo1g00264 1 4228464 4233634 Pumo9g01553 9 43619834 43621156 ECH