Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00263 ATGAAAACATCACCTTCCTCCTCCGTCAACAGCCTATGTCTCGCCGTCGCCGTCGCCGCCGTACTCATACTCTCTCTGGCACCCTCATCCCATGGCCTGGGCTCCGGCGCTACCCTGGCCCTCTCCGACGCCTCCGCCACCGTGTGCGCCGTCGTAGCACGCGAGTCCATGCGCCGCATTGAGTGTTACCGACAGGGGCAGGTGGTTCCCATCGCTCCCAACGTTAGCTTTTCGTCGATTTCCGGTGGGAGGAACTACTTCTGCGGCATAAGGTCCAGTAACTCCAATTTGCTTTGCTGGAACACAAGCTCTTCCTTCGAAAGGAGAAGGCTTTACAACGATAGTTCTGTTCCATTGGAGAATCTCGCCGTCGGGGATACCCACGTTTGCGCCACCGAGGTGGGTAATGGCACGGTGCAGTGCTGGAGAACCGGTGACACGTTTCAAAATCTATCTGGGGCTGATCAATTCGCTTCAATTTCATCTGGGTCTGGCTTCTCTTGCGGAATTTTGAAGAATGGTTCTCGGGTTCGGTGCTGGGGAGACACCAACGTTGCGCAACAGATTGAGAATGCGTTTGGGAACATGTCCATGTTGAGTCTTATCGCAGGTGGTTCGCATGTTTGTGGGTTGAACTCAACTGGGTTTTTAGTGTGTGGAAATAGTTCTGGGCAACTAGATTCTCGAGGTGCGGTTTTTGAGTATGTTGGGTTGGCACTTGGAGCTGAGCATGGTTGTGCGATTAGAGGGTTGAATGGTTCGGTTGTTTGTTGGACTTGGAGTGGCAATGGGCAATTCTCGGTGAATAATGTTACAGAAGGAATTTCCTTTGAGGTAATTGTTTCTGGTTCTAACTTTGTTTGTGGATTGACAACGAACAATTTGACAGTGGTGTGTTGGGGTCCTGGTTGGTCTAATAGTTCAAGGTTTGAGCTTCCTTTTCCAAGTGTTCTTCCAGGGCCTTGTGTTCAATCTTCTTGTGGAGAGTGTGGTTCATATCTTGATTCTCAATCTCTATGCTCTGGCTCTGGTAACATTTGTAAGCCAATGACTTGTAGGCCTCAAACAACAGTTCCACCGCCGCCCTCACCTTCTCCACCGCCACCATCAATATCACCGCCACCACCATCACCACTGTCACCACCGCCGCCTTCGTCATCTCGATCAAAGACCTTGACAAGGGGGTTATTGGCATTTGCTATTATTGGTTCAGTGGGAGCTTTTGCTGGAATATGCACTATAGTTTACTGCTTATGGAGTGGAGTTTGTTTTGGGAAGAAGAAAGTCCACAATTCTGTGCAGCCTACAATCACAAGAGGTAGCAGTGGTTCAAATGGTGGGGGTGCTTCCAATAATAGCAATTCTTCGATATCATCTATGATTATTCGTCAGACTTCAATAATAATGAGGCGCCAGAGGAGTGGAACCTCATCAACAAAGCATCCAGACAAGGCTGAGGAGTTCACTCTAGCTGAGCTTGTGGCTGCCTCCAACAATTTCTCACTTGAAAACAAGATTGGTGCTGGAAGCTTTGGTGTTGTGTATAAAGGCAAACTCGCGGATGGTCGCGAGGTGGCAATCAAGAGGGGTGAAACCGGGTCCAAGATGAAGAAGTTCCAAGAGAAAGAGAGTGCATTCGAGTCTGAATTGGCCTTCTTGTCACGTCTGCACCACAAGCACTTGGTTGGGCTAGTTGGGTTCTGTGAAGAGAATGATGAGAGGCTCTTGGTGTATGAGTACATGAAGAATGGGGCGTTGTATGATCATTTACATGACAAGAACAATGTGGAGAAGGCTAGCAAACCTGACCGTGATCACCGACCAATGAAGGCAGCGGGAACTGTTGGATACATTGATCCTGAGTACTATGGTCTAAATGTGTTGACAGCAAAGAGTGATGTGTATGGGCTTGGAGTTGTACTGCTTGAACTTCTAACGGGAAAGAGAGCTATATTCAAGTATGGAGAAGATGGAGGCACCCCATTAAGTGTGGTGGACTTTGCAGTGCCTGCTATTATGGCTGGAGAATTAGTGAAAATTTTGGATCCGAGAGTTGGACCACCGGATGTGAATGAAGCTGAGGCAGTGGAGTTAGTGGCCTATACAGCTATGCATTGTGTGAATTTGGAAGGGAAAGATAGACCAACCATGGCTGACATTGTGGCCAATTTGGAAAGGGCATTGGCTATTTGTGATAGTAGCCATGATAGCATTTGCAGCGGAGAAAACTTAGATACAATATTTAAGGGACTGTGCAATGACTCGCCCACGAGCTTTGAATTGACCAGTCTGTGCTTTTCTAATGTATATCTAGAAGACTCGGTCTTACAATTTGCTCTTGTTTATGAAACAAAGAATTCAATGGACTATGCGACAGAACATGTTGCTGCACGATTGTTCACCCGAGCTGAGCTTAAAGCAGCCACCAACAATTTCTCACTGGTCAACATGATTGGTGCTGGAAGCCTTGCTGTTGTGTACAGAGGCAAACTCGTTGATGGTCGTGAGGTGGCTATCAAGAGGGGTGGAACCGGAACAGTTGGATACCTTGATCCACAGTACTGTCGTCTAAATGTGTTGACAACAAAGAGTGATGTGTATGGGCTTGGAGTTGTACTGCTTGAACTTTTAACGGGAAATAGACCTATATTCAAGTCTGGGGAAGATGGAGGCATCCCATTAAGTGTAGTGGACTTTGCCGTGCCTGCTATTTTGGCTGGAGAATTGGTGAAAATTTTGGATCCAAGAGTTGGACCACCTAATGTGAATGAAGCAGAGGCAGTGAAATTAGTGGCTTATACCGCTATCCATTGTGTGAGTTGGGAAGGGAAAGATAGACAAACCGTGGCTGACATTGTGATTAATTTGGAGAGGGCTTTTGGCTATTTGTGA 2892 0.473 MKTSPSSSVNSLCLAVAVAAVLILSLAPSSHGLGSGATLALSDASATVCAVVARESMRRIECYRQGQVVPIAPNVSFSSISGGRNYFCGIRSSNSNLLCWNTSSSFERRRLYNDSSVPLENLAVGDTHVCATEVGNGTVQCWRTGDTFQNLSGADQFASISSGSGFSCGILKNGSRVRCWGDTNVAQQIENAFGNMSMLSLIAGGSHVCGLNSTGFLVCGNSSGQLDSRGAVFEYVGLALGAEHGCAIRGLNGSVVCWTWSGNGQFSVNNVTEGISFEVIVSGSNFVCGLTTNNLTVVCWGPGWSNSSRFELPFPSVLPGPCVQSSCGECGSYLDSQSLCSGSGNICKPMTCRPQTTVPPPPSPSPPPPSISPPPPSPLSPPPPSSSRSKTLTRGLLAFAIIGSVGAFAGICTIVYCLWSGVCFGKKKVHNSVQPTITRGSSGSNGGGASNNSNSSISSMIIRQTSIIMRRQRSGTSSTKHPDKAEEFTLAELVAASNNFSLENKIGAGSFGVVYKGKLADGREVAIKRGETGSKMKKFQEKESAFESELAFLSRLHHKHLVGLVGFCEENDERLLVYEYMKNGALYDHLHDKNNVEKASKPDRDHRPMKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKYGEDGGTPLSVVDFAVPAIMAGELVKILDPRVGPPDVNEAEAVELVAYTAMHCVNLEGKDRPTMADIVANLERALAICDSSHDSICSGENLDTIFKGLCNDSPTSFELTSLCFSNVYLEDSVLQFALVYETKNSMDYATEHVAARLFTRAELKAATNNFSLVNMIGAGSLAVVYRGKLVDGREVAIKRGGTGTVGYLDPQYCRLNVLTTKSDVYGLGVVLLELLTGNRPIFKSGEDGGIPLSVVDFAVPAILAGELVKILDPRVGPPNVNEAEAVKLVAYTAIHCVSWEGKDRQTVADIVINLERAFGYL 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00263 963 Gene3D Transferase(Phosphotransferase) domain 1 845 962 - -
Pumo1g00263 963 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Pumo1g00263 963 Pfam Protein kinase domain 501 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00263 963 Gene3D Phosphorylase Kinase; domain 1 461 580 - -
Pumo1g00263 963 SUPERFAMILY Protein kinase-like (PK-like) 844 956 IPR011009 -
Pumo1g00263 963 Gene3D Phosphorylase Kinase; domain 1 781 844 - -
Pumo1g00263 963 MobiDBLite consensus disorder prediction 354 385 - -
Pumo1g00263 963 ProSiteProfiles Protein kinase domain profile. 500 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00263 963 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 796 840 IPR044815 GO:0004674
Pumo1g00263 963 SUPERFAMILY RCC1/BLIP-II 63 301 IPR009091 -
Pumo1g00263 963 FunFam serine/threonine-protein kinase-like protein CCR1 469 580 - -
Pumo1g00263 963 Gene3D Transferase(Phosphotransferase) domain 1 589 740 - -
Pumo1g00263 963 Gene3D - 28 153 IPR009091 -
Pumo1g00263 963 SUPERFAMILY Protein kinase-like (PK-like) 789 841 IPR011009 -
Pumo1g00263 963 MobiDBLite consensus disorder prediction 354 388 - -
Pumo1g00263 963 Pfam Regulator of chromosome condensation (RCC1) repeat 158 183 - -
Pumo1g00263 963 Gene3D - 154 363 IPR009091 -
Pumo1g00263 963 MobiDBLite consensus disorder prediction 436 456 - -
Pumo1g00263 963 SUPERFAMILY Protein kinase-like (PK-like) 477 724 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00263 Pumo-Chr1 4183718 4189531 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00263 845 960 Receptor kinase-like Gene Family AT3G55950 63.636 3.21e-32 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pumo1g00263 Pkinase 1.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00263 - - gmx:100786639 1167.14