Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00261 ATGGAATTGAATAGTGAAATTGTTGGGAGCATTGACATGGCCGATAATATCACAGAAAGTTTTAGTTGGGGTTGGGCAGTGGACAATGCGATAAGGAGTAGGAGTCCGTCAAATTTGGGAGCATCCCCTGTCCATAGTTTTCGTTCGGTAGTGGACAGTGCCATAAAGAGTAGGACTCCCTCAAATTTGGGAACATCCCCTTCCCCTCTCCATCGTTTTGCTTCGGCACTACTAGTGGAAGGGGTGTCCAATGCCCCAAGATATGTTGCTCCACAATTATTCACCCTGGCTCAGCTTCAAAAAGCCACCAACAAATTTTCACTTCACAACAAGATTCGTGATGATGACTACAGAGGCAAACTCGTTGATGGTCGTGAGGTCACAATCCGGAGGGAAAAAATCGCGAGATACTCGTTTGATTTTGGTAAGCGTGAATTTGTCATCTCGTCCCGTTTACACCACAAGAACTTGGTTAGGCTGGTTGGGTACTGTGAAAAGAAAGATAAAAGGCTCTGGGTGTATGAGTATATGAAGAATGGGAGGTTGTATGATCATTTGCGAGGAGAATGTAGCAGTGTGTTGAATTCGTGGAAAATGAGGATCAAAATTGCTTTGGATGCTTCCCGTGGAATAGAATATCTTCATAATTTGGAAGTTCCACCTATTATTCACGGAGATATCAGGTCCTCCAACATTCTTCTTGATGCCATGTTGGACGGCAAAACAAAGAGTGACGTATATGGGCTTGGAGTTGTACTGCTTGAACTTTTAACGGGAATGGATGCTAGAAAAGTGGATTATGATATAGATGGACTACGCCCCCCATTAAATCTGGTGCAGTATGCAGTGCCTGATATTATGAATGAAGATTTGGTCAGTATTTTGGATCTAAGGGTTGGACCACCCGATGTGAATGAAGCAAAGGCACTGGAGGTAGTGGCTCAAACCGCTATCCGTTGTGTGGAAGGGAAAGATAGACCAACCATGGCTGAAATTGTGGTCAATTTGGAGAGGGCTTTGGCTATTTGTGATAGTAGCCCACATGATAGCATTTCCAGCGATACTATCTCTCATGTTTCAGAACGATATATTAAGACAATCTATAATTAG 1110 0.4333 MELNSEIVGSIDMADNITESFSWGWAVDNAIRSRSPSNLGASPVHSFRSVVDSAIKSRTPSNLGTSPSPLHRFASALLVEGVSNAPRYVAPQLFTLAQLQKATNKFSLHNKIRDDDYRGKLVDGREVTIRREKIARYSFDFGKREFVISSRLHHKNLVRLVGYCEKKDKRLWVYEYMKNGRLYDHLRGECSSVLNSWKMRIKIALDASRGIEYLHNLEVPPIIHGDIRSSNILLDAMLDGKTKSDVYGLGVVLLELLTGMDARKVDYDIDGLRPPLNLVQYAVPDIMNEDLVSILDLRVGPPDVNEAKALEVVAQTAIRCVEGKDRPTMAEIVVNLERALAICDSSPHDSISSDTISHVSERYIKTIYN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00261 369 ProSiteProfiles Protein kinase domain profile. 97 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00261 369 SUPERFAMILY Protein kinase-like (PK-like) 85 336 IPR011009 -
Pumo1g00261 369 Gene3D Transferase(Phosphotransferase) domain 1 241 351 - -
Pumo1g00261 369 Gene3D Transferase(Phosphotransferase) domain 1 177 240 - -
Pumo1g00261 369 ProSitePatterns Tyrosine protein kinases specific active-site signature. 222 234 IPR008266 GO:0004672|GO:0006468
Pumo1g00261 369 Pfam Protein kinase domain 143 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00261 369 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 92 236 IPR044815 GO:0004674
Pumo1g00261 369 Gene3D Phosphorylase Kinase; domain 1 83 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00261 Pumo-Chr1 3929600 3931199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00261 94 361 Receptor kinase-like Gene Family AT3G55950 47.289 1.17e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pumo1g00261 Pkinase 2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00261 - - gmx:100787718 327.02