Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00260 ATGACATCACCGTGGAGTAAGATTCACCACTCTCACCCTTCCCCGCCACCGCCACTCTCCGACTCCGACTCCGACGGCGGCGGCGATTCCTCCTCCGCCGCCCCCCTCCGGCACTCGGACCTCTCCGACTCCATCTTCAAGCCCTACCTCGAACTCTCCGGCCACTCCGGCGCCGACCTCTCGAAGATCCAATCGTTCCTGACGTCATCCTCCGCCGGCGCCCTCTCGTGCCTGATCTGCCTCGAACGAATCAAACCCTCCGAGCCTACGTGGTCCTGCTCCTCCCTCTGCTTCGCCGTCTTCCACCTCATCTGCATCCAGAGCTGGGCCCGCCAGGCCTCCGACCTCGCCGCCGCACGCGCCGCCACTCGTCTCCCCATCTCCCCCGCCAACGCCTCCGACACCGCCCTCTGGAACTGCCCCAAATGCAGATCGGAGTACCCCAAATCGCACATTCCCAAAACCTATCTCTGCTTCTGCGGCAAGCTTGAGAACCCTCCCAATGATCCGTGGATTTTGCCTCACTCTTGCGGCGAGGTTTGTGGAAGACCGTTGAAGCACAATTGCGGGCACCATTGTTTGCTACTCTGCCATCCCGGCCCGTGCCCCTCTTGCCCCAAACTCGTTAAAGTTCGATGCTTTTGTGGGTGCCTTGAAGATGTTCGACGATGTGGCTTCAAGGAATTTTCATGCAATAAACCTTGTTCCAAGGTTTTGGATTGCGGGGTTCACCGTTGCAGTGAGGTTTGCCACCCTGGCACTTGCCCTCCTTGCCGGACACGTGGCGTGTGTTCGTGCCAGTGTGGGAAGGTCAAGGAGGAGAAGGAGTGTTGTGATCGTGTTTTTCAGTGTGGGAATCCGTGTGAGAAGAGGCTTAGCTGTGGGAAGCATCTTTGTGAGAGAGGGTGTCATTCTGGTGAGTGTGGTGAGTGTCCTCTTAAGGGGAAGAGAACGTGTCCTTGTGGGAAAAGGGTTTATGAAGGAATGCCTTGTGATGCTCCTGTGCAGCTTTGTGGGGCTACCTGTGATAAGATGCTACCCTGTGGCTACCACAGGTGCCCCGAGCGGTGCCACCGTGGACACTGCGTGGAGACTTGTAGAGTTGTTGTGAAGAAGTCATGTCGATGTGGGAGCCTCAAGAAAGATGTTCCTTGCTATCAAGATTTGGCGTGTGAAAGGAAGTGTCAGAGGATGCGTGACTGCGGTCGGCATGCTTGCAAGCGTCGCTGCTGCGATGGGGATTGCCCTCCCTGCTCTGAGATATGTGGCAGGAGGCTTCGATGTAAGAACCATAAATGCCCTTCTCCATGTCATAGAGGTCCTTGTGCTCCTTGCCCAATAATGGTGACAATTTCCTGTGCATGTGGAGAGACACGTTTTGAGGTTCCTTGTGGTACCGAAATGGACCAAAAGCCACCTAGATGTCCTAAACCATGTCCTATCACTCCTTTATGTCGGCATGCATCAAATTGCAAGCCACATAAATGCCATTATGGAGCCTGCCATCCTTGTCGGCTACCTTGTGCCGAAGAGTACCAATGTGGCCATACATGCAAATTAAGGTGTCATGGTGCTAAGCCTCCTCCTAATCCAGAGTTTACTCTTAAACCAAAGAAAAAGAAGATTATACAACAAAGTGAAGGTGTTGCTGGCACTCCATGCCCTCCTTGCCCAGAACTTGTGTGGAGATCATGTGTTGGGCAACACATTGGAGCTGAGAGAATGATGGTCTGCTCTGATAAATCACTGTTCTACTGTGAAAACTTATGTGGTAATCCTCTAGCGTGTGGTAATCATTATTGTACAAAAACCTGCCATGCCTTGGAGAACCAGTTACAAGGAAGCGAACCTTGTGAAGATTGTTATCTTCCTTGCCAAAAGGAAAGAGAGCCTGCATGTCCACATCACTGCCCTCAGTCATGCCATCCTGGAGACTGTCCTCCATGCAAGGTGCTCATTAAACGGTCATGTCACTGTGGCGCAATGGTCCATGTGTTTGAGTGCTTATATTACAACAGCTTGTCTGCAAAGGGTCAAGAGACTGTCCGTTCATGTGGTGGGCCATGTCACAGAAAGTTGCCAAATTGTACACATCTATGCCCAGAGACATGTCATCCTGGTCAATGCGCAAATGCTGAGAAATGCTGTAAAAAGGTCACTGTTCGATGCAAATGCCAAACATTGAAAAAGGAGTGGGTTTGTCAAGATGTTCAAGCAGCATATCATCTTGCTGGTTGCCATCCAAGGGATATACCAAAAAATCAATTTGGAATTGGACTCATTCCTTGTGATTCTGATTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGATCTACAATTACGTAAATCTAGAGTTACAGAGGTACAAGAGTCAGATACAGAAAAATCAGTTCGGAAGCGACGAAAAAGGCGGGAACGGGTTCTAGAATCCAAGGAAACAACAACACTACAGAAAATTATTTCCAGAATGAAGCGGCTTCTTCTATTTGTCTTTATTTTGGTCATACTTCTTGCTGCTACATATTATGGGTACAAGGGACTTTTATGGCTCTCTGATTGGATGAATGAAGTGGATGAACGAAGACAAAGATATTCTCGAATCAAATGA 2607 0.5021 MTSPWSKIHHSHPSPPPPLSDSDSDGGGDSSSAAPLRHSDLSDSIFKPYLELSGHSGADLSKIQSFLTSSSAGALSCLICLERIKPSEPTWSCSSLCFAVFHLICIQSWARQASDLAAARAATRLPISPANASDTALWNCPKCRSEYPKSHIPKTYLCFCGKLENPPNDPWILPHSCGEVCGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVRCFCGCLEDVRRCGFKEFSCNKPCSKVLDCGVHRCSEVCHPGTCPPCRTRGVCSCQCGKVKEEKECCDRVFQCGNPCEKRLSCGKHLCERGCHSGECGECPLKGKRTCPCGKRVYEGMPCDAPVQLCGATCDKMLPCGYHRCPERCHRGHCVETCRVVVKKSCRCGSLKKDVPCYQDLACERKCQRMRDCGRHACKRRCCDGDCPPCSEICGRRLRCKNHKCPSPCHRGPCAPCPIMVTISCACGETRFEVPCGTEMDQKPPRCPKPCPITPLCRHASNCKPHKCHYGACHPCRLPCAEEYQCGHTCKLRCHGAKPPPNPEFTLKPKKKKIIQQSEGVAGTPCPPCPELVWRSCVGQHIGAERMMVCSDKSLFYCENLCGNPLACGNHYCTKTCHALENQLQGSEPCEDCYLPCQKEREPACPHHCPQSCHPGDCPPCKVLIKRSCHCGAMVHVFECLYYNSLSAKGQETVRSCGGPCHRKLPNCTHLCPETCHPGQCANAEKCCKKVTVRCKCQTLKKEWVCQDVQAAYHLAGCHPRDIPKNQFGIGLIPCDSDCKSKVQVVESDLQLRKSRVTEVQESDTEKSVRKRRKRRERVLESKETTTLQKIISRMKRLLLFVFILVILLAATYYGYKGLLWLSDWMNEVDERRQRYSRIK 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00260 868 CDD NF-X1-zinc-finger 177 225 - -
Pumo1g00260 868 CDD NF-X1-zinc-finger 284 331 - -
Pumo1g00260 868 CDD NF-X1-zinc-finger 338 387 - -
Pumo1g00260 868 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 59 523 IPR034078 GO:0003700
Pumo1g00260 868 CDD NF-X1-zinc-finger 231 279 - -
Pumo1g00260 868 CDD NF-X1-zinc-finger 418 466 - -
Pumo1g00260 868 MobiDBLite consensus disorder prediction 1 38 - -
Pumo1g00260 868 SUPERFAMILY RING/U-box 72 150 - -
Pumo1g00260 868 Pfam NF-X1 type zinc finger 189 206 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 Pfam NF-X1 type zinc finger 635 650 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 Pfam NF-X1 type zinc finger 348 367 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 Pfam NF-X1 type zinc finger 514 523 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 Pfam NF-X1 type zinc finger 294 312 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 Pfam NF-X1 type zinc finger 241 259 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 Pfam NF-X1 type zinc finger 596 606 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 Pfam NF-X1 type zinc finger 401 419 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 Pfam NF-X1 type zinc finger 422 446 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 CDD NF-X1-zinc-finger 391 439 - -
Pumo1g00260 868 SMART znfxneu3 241 260 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 SMART znfxneu3 491 506 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 SMART znfxneu3 401 420 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 SMART znfxneu3 633 651 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 SMART znfxneu3 596 623 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 SMART znfxneu3 348 368 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 SMART znfxneu3 514 559 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 SMART znfxneu3 696 718 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 SMART znfxneu3 189 207 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 SMART znfxneu3 294 313 IPR000967 GO:0005634|GO:0008270
Pumo1g00260 868 SMART znfxneu3 428 447 IPR000967 GO:0005634|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00260 Pumo-Chr1 3914834 3929028 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Pumo1g00260 zf-NF-X1 0.0024 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00260 K15683 - gmx:100799540 1723.75