Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00256 ATGGCCGCCAGAGGAACTGGAACGCTGATTTTGGTGTGTCTCTTATGGCTTTTCTTCCTCTGCGCCACCATTGCTTTCTTTCAGCTCCACTTGGTAGACAACCGAACCAATCAACCTTCCTCTCGCAGTAACTTCATCACAACTCAACACCATCGCTCAGTGACAGATACCCCTTTGGAACAGGATTTGGAGGGTGTCACCCACAAGGTGTATTTTGATATACAGATCCATGGCAAATTAGCGGGTCGCATAGTCATGGGCCTTTTTGGGAACACAGTACCGAAAACCGTAGAAAACTTTCGAGCGCTTTGTACAGGAGAGAAAGGAATGGGAAGAAGTGGGAAGTCTCTTCATTATAAAGGGAGCACATTCCATAGAATTATACCAAGCTTTATGGTCCAGGGGGGTGATTTCACCCGTGGTGATGGAAGAGGTGGAGAATCAATCTATGGTGATAAGTTTGCTGATGAAAACTTCAAGCTCAAGCATACTGGGCCAGGATACTTATCTATGGCGAATTCTGGGCAAGACACCAATGGCTCCCAGTTTTTCATAACAACAGTTAAAACTAGCTGGCTGGATGGACGCCATGTTGTATTTGGCAAGGTACTTTCCGGTATGGACGTTTTGTACAAGATTGAAGCAGAAGGAAGTGAAAGTGGCTCGCCTAAGAACAAGGTTGTCATATTAGACAGTGGGGAATTAACTTCATGA 714 0.4538 MAARGTGTLILVCLLWLFFLCATIAFFQLHLVDNRTNQPSSRSNFITTQHHRSVTDTPLEQDLEGVTHKVYFDIQIHGKLAGRIVMGLFGNTVPKTVENFRALCTGEKGMGRSGKSLHYKGSTFHRIIPSFMVQGGDFTRGDGRGGESIYGDKFADENFKLKHTGPGYLSMANSGQDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDVLYKIEAEGSESGSPKNKVVILDSGELTS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00256 237 SUPERFAMILY Cyclophilin-like 66 235 IPR029000 -
Pumo1g00256 237 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 71 234 IPR002130 GO:0000413|GO:0003755
Pumo1g00256 237 CDD cyclophilin_ABH_like 68 233 - -
Pumo1g00256 237 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 69 235 - -
Pumo1g00256 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 182 194 IPR002130 GO:0000413|GO:0003755
Pumo1g00256 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 195 210 IPR002130 GO:0000413|GO:0003755
Pumo1g00256 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 167 182 IPR002130 GO:0000413|GO:0003755
Pumo1g00256 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 124 136 IPR002130 GO:0000413|GO:0003755
Pumo1g00256 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 88 103 IPR002130 GO:0000413|GO:0003755
Pumo1g00256 237 Gene3D - 58 237 IPR029000 -
Pumo1g00256 237 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 72 231 IPR002130 GO:0000413|GO:0003755
Pumo1g00256 237 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 119 136 IPR020892 GO:0003755|GO:0006457
Pumo1g00256 237 FunFam Peptidyl-prolyl cis-trans isomerase 64 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00256 Pumo-Chr1 3883950 3886975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00256 23 232 U-box Gene Family AT5G67530 37.778 1.44e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00256 K01802 - gmx:100792649 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00256 1 3883950 3886975 Pumo1g00256 1 3883950 3886975 ECH