Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00248 ATGGCTTCTTTGCCAGCTATTCTCACGCTTGCCGTCGTCGTCCTCTTCCTCCGCCGCGTGTTCCGCCGGCGGCAGTTCAGGGTGCCACCGGGGAGCTACGGCTTTCCGCTCATCGGCGAGACGCTGCAGCTGATATCCGCGTACAAGAGCGACAACCCGGAGCCGTTCATCGACGAGCGCGTGAAGCGGTACGGTTCGATCTTCACGACGCACGTGTTCGGCGAACCGACGGTGTTCTCGGCGGACCCGGAGGTGAACCGGTTCATTCTGCAGAACGAAGGGAAGCTGTTGGATTGCAGTTACCCCGGTTCGATATCGAACCTGCTCGGAAAACACTCTCTTCTCTTGATGAAAGGTGCTCTCCACAAGAGAATGCACTCTCTCACCATGAGCTTCGCTAATTCCTCCATCATCAAGGATCATCTTCTTCATCACATCGACCGCCTCATCTGCCTCAACTTGGATGCATGGTCCCACTGCATCCTTCTCATGGACCAGGCCAAAAAGATAACATTTGAGCTAACCGTGAAGCAGTTGATGAGCTTTGACCCAGATGAATGGACTGAGAATTTAAGGAAAGAGTATGTTCTTGTGATTGAAGGATTCTTCACTCTCCCTTTTCCTCTCTTCTCCACCACATACCGCAGAGCCATCAAGGCAAGAACAAAGGTGGCAGAGGCACTAACATTGGTAGTGAGACAGAGGAGAAAAGAGTATGATGAAAACAAAGAGAAAAAGAGTGACATGCTTGGGGCACTGTTGGCCTCCGGTGACCACTTTTCCGACGAGGAAATAGTGGATTTTTTGTTGGCTTTGCTCGTCGCCGGTTATGAGACCACGTCTACCATAATGACTCTTGCAATCAAGTTCCTCACTGAGACTCCTCTGGCCTTGGCACAGCTAAAGGAAGAGCATGACCAAATCAGAGCAAGGAGTGACCCAGGGGCACCACTGGAATGGACGGATTACAAGTCAATGGCATTTACTCAATGTGTTGTGAATGAGACCTTGAGGGTGGCAAACATAATTGGTGGGATATTTAGGAGAGCAACGACAGACATCGACATAAAAGGTTACACTATTCCTAAGGGATGGAAGGTCTTTGCATCATTTCGTGCTGTACATCTGAATCCTGAACATTACAAAGATGCCCGCACCTTCAATCCATGGAGATGGCAGAGTAATTCATCAGAAACAGCAAATCCTGGGAATGTTTATACACCATTTGGAGGAGGGCCACGTTTGTGCCCTGGCTATGAGCTAGCCAGAGTTGTACTTTCCATCTTTCTTCACCGCATTGTCACCCGCTTCAGTTGGGTTCCTGCTGAGGAAGATAAGTTGGTGTTTTTCCCTACTACTAGGACGCAGAAGCGGTATCCTATTATTGTCAAACGTAGAGACTAG 1404 0.4957 MASLPAILTLAVVVLFLRRVFRRRQFRVPPGSYGFPLIGETLQLISAYKSDNPEPFIDERVKRYGSIFTTHVFGEPTVFSADPEVNRFILQNEGKLLDCSYPGSISNLLGKHSLLLMKGALHKRMHSLTMSFANSSIIKDHLLHHIDRLICLNLDAWSHCILLMDQAKKITFELTVKQLMSFDPDEWTENLRKEYVLVIEGFFTLPFPLFSTTYRRAIKARTKVAEALTLVVRQRRKEYDENKEKKSDMLGALLASGDHFSDEEIVDFLLALLVAGYETTSTIMTLAIKFLTETPLALAQLKEEHDQIRARSDPGAPLEWTDYKSMAFTQCVVNETLRVANIIGGIFRRATTDIDIKGYTIPKGWKVFASFRAVHLNPEHYKDARTFNPWRWQSNSSETANPGNVYTPFGGGPRLCPGYELARVVLSIFLHRIVTRFSWVPAEEDKLVFFPTTRTQKRYPIIVKRRD 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00248 467 FunFam Cytochrome P450 90A1 18 466 - -
Pumo1g00248 467 CDD CYP90-like 60 465 - -
Pumo1g00248 467 Pfam Cytochrome P450 205 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00248 467 Gene3D Cytochrome P450 19 466 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00248 467 SUPERFAMILY Cytochrome P450 21 466 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00248 467 PANTHER CYTOCHROME P450 26 25 440 - -
Pumo1g00248 467 PRINTS P450 superfamily signature 407 416 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00248 467 PRINTS P450 superfamily signature 275 292 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00248 467 PRINTS P450 superfamily signature 331 342 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00248 467 PRINTS P450 superfamily signature 416 427 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00248 467 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 409 418 IPR017972 GO:0005506|GO:0016705
Pumo1g00248 467 PRINTS E-class P450 group I signature 406 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00248 467 PRINTS E-class P450 group I signature 416 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00248 467 PRINTS E-class P450 group I signature 370 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00248 467 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00248 467 PRINTS E-class P450 group I signature 330 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00248 467 PRINTS E-class P450 group I signature 284 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00248 467 PRINTS E-class P450 group I signature 264 281 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00248 Pumo-Chr1 3810194 3815851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00248 117 467 Cytochrome P450 AT5G05690 80.057 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00248 K09588 - gmx:100795125 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00248 1 3810194 3815851 Pumo1g00248 1 3810194 3815851 ECH
Pumo1g00248 1 3810194 3815851 Pumo9g02325 9 56504670 56511136 PCT