Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00247 ATGGCAACCGCCGCTGCCACGTCATACTTCTTCGGCACCCGTCTCAACAACCCGACAACCTTAAACAACGGAAGATTCCACGCGCTCATCAACTTCGGCAAAAAGAAGGCGGCGGCGGCGCCGCCACAGAAGAAGAAGGAAGTGAAAGTGAGACCCTCCGGCGGCGACCGGCTGGTGTGGTTCCCTAATGCGGAGCCGCCGGAGTGGCTCGACGGAAGCATGATCGGCGACCGCGGGTTCGACCCGTTCGGGTTCGCCAAGCCCGCGGAGTACTTGCAGTTCGACCTGGACTCGCTGGACCAGAACCTCGCGAAGAACGTCGCCGGCGAAGTGATCGGAACCAGGGTGGAGGTCGCGGATGTTAAACCGACACCGTTTCAGCCCTACTCGGAGGTGTTCGGAATTCAGAGGTTCCGCGAGTGCGAAGTCATTCATGGAAGGTGGGCAATGCTGGGTGCTCTCGGTGCTTTGGCCGTTGAGGCTCTCACCGGCGTCTCATGGCAAGACGCCGGAAAGGTAGAGCTGGTGGAAGGGTCATCTTACTTGGGACTTCCTCTTCCATTTTCATTGACGACACTGATATGGATTGAAGTGATAGTGATAGGGTACATAGAGTTTCAAAGAAATGCAGAACTTGACCCAGAGAAAAGGTTGTACCCAGGTGGCAGGTTCTTCGATCCTCTGGGTTTGGCCAACGACCCTGAAGAAAAGGCCAGACTTCAACTTGCAGAGATCAAGCATTCCCGCTTAGCCATGGTCGTCTTCCTCATCTTTGCAATTCAAGCTGCTGTAACAGGAAAAGGCCCTATAAGTTTTATTGCTACCTTCAACAAGTGA 837 0.5484 MATAAATSYFFGTRLNNPTTLNNGRFHALINFGKKKAAAAPPQKKKEVKVRPSGGDRLVWFPNAEPPEWLDGSMIGDRGFDPFGFAKPAEYLQFDLDSLDQNLAKNVAGEVIGTRVEVADVKPTPFQPYSEVFGIQRFRECEVIHGRWAMLGALGALAVEALTGVSWQDAGKVELVEGSSYLGLPLPFSLTTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGRFFDPLGLANDPEEKARLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFIATFNK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00247 278 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 32 274 IPR001344 GO:0009765|GO:0016020
Pumo1g00247 278 SUPERFAMILY Chlorophyll a-b binding protein 56 275 - -
Pumo1g00247 278 Gene3D Chlorophyll a/b binding protein domain 59 278 - -
Pumo1g00247 278 Pfam Chlorophyll A-B binding protein 66 262 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00247 Pumo-Chr1 3771958 3776295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00247 11 275 Chloroplast and Mitochondria Gene Families AT3G08940 71.698 2.39e-136 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00247 K08915 - gmx:100820335 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00247 1 3771958 3776295 Pumo1g00247 1 3771958 3776295 ECH
Pumo1g00247 1 3771958 3776295 Pumo9g02326 9 56547658 56551091 ECH
Pumo1g00247 1 3771958 3776295 Pumo9g02326 9 56547658 56551091 PCT