Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00241 ATGGCAAAGAAACTGACGAAAGCGCAGAAGAAGATAGCATACGATGCGAAGCTGTGCCAGCTTCTGGATAATTACACCCAAATTCTGGTGGTGGCTGCGGACAACGTCGGATCCAACCAGCTTCAGAACATTCGACAAGGTCTACGTGGCGACTCCATCATTCTCATGGGAAAGAACACCATGATGAAGCGCACTATTAAGATCCATGCCGAGAACACCCGCAACTCCACCATCCTCAACCTTATTCCCCTTCTAGTCGGTAACGTGGGGTTGATTTTCACCAAAGGTGACGTGAAGGAGGTTAAGGAAGTGGTTGCCAAGTACAAGGTGGGAGCTCCTGCTCGTGTAGGTTTAGTTGCACCTATTGATGTTATTGTTCCCCCAGGCAACACAGGGCTGGATCCCTCTCAGACTTCTTTCTTTCAGGTGCTTAACATCCCTACCAAGATTAACAAGGGTACTGTGGAAATTATCACCCCTGTAGAACTCATTAAGAAGGGTGAAAAGGTTGGCTCTTCTGAAGCTGCATTGCTTTCCAAGCTTGCCATAAGGCCATTCTCATATGGGCTTGCTGTTGTTTCTGTTTATGACAATGGCTCAGTTTTTAGCCCTGAGGTTCTTGATCTCACTGAAGATGACCTTGTTGTGAAGTTTGCTGAAGGTGTCTCCATGGTGTCTTCACTTTCCTTGGCTATCTCATACCCATCAATTGCAGCTGCACCACACATGTTTGTCAATTCCTATAAGAACATCCTCGCTGTTGCACTGGCAACAGAATACTCGTTCCCTGAGGCAAACAAGGTTAAGGACTACTTGAAGGATCCTAGTAAATTTGCTGTAGCTGTTGTAGCCGCACCTGCTACTGATTCTGGCACTGCACCAGCTGCTGCATCCAAGGTGGAGGAAAAGAAGGAAGAATCAGAAGAATCTGATGATGACATGGGCTTCAGTTTGTTTGATTAA 963 0.4652 MAKKLTKAQKKIAYDAKLCQLLDNYTQILVVAADNVGSNQLQNIRQGLRGDSIILMGKNTMMKRTIKIHAENTRNSTILNLIPLLVGNVGLIFTKGDVKEVKEVVAKYKVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSEAALLSKLAIRPFSYGLAVVSVYDNGSVFSPEVLDLTEDDLVVKFAEGVSMVSSLSLAISYPSIAAAPHMFVNSYKNILAVALATEYSFPEANKVKDYLKDPSKFAVAVVAAPATDSGTAPAAASKVEEKKEESEESDDDMGFSLFD 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00241 320 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Pumo1g00241 320 Gene3D - 6 209 IPR043141 -
Pumo1g00241 320 Pfam 60s Acidic ribosomal protein 235 319 - -
Pumo1g00241 320 FunFam 60S acidic ribosomal protein P0 113 186 - -
Pumo1g00241 320 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Pumo1g00241 320 Pfam Ribosomal protein L10 7 108 IPR001790 -
Pumo1g00241 320 CDD Ribosomal_P0_L10e 9 185 - -
Pumo1g00241 320 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 5 303 - -
Pumo1g00241 320 MobiDBLite consensus disorder prediction 287 320 - -
Pumo1g00241 320 FunFam Ribosome assembly factor mrt4 17 118 - -
Pumo1g00241 320 MobiDBLite consensus disorder prediction 306 320 - -
Pumo1g00241 320 Gene3D - 114 185 IPR043164 -
Pumo1g00241 320 PIRSF L10E 1 320 IPR030670 GO:0042254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00241 Pumo-Chr1 3678346 3681798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00241 1 319 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 77.743 2.64e-177 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00241 K02941 - gmx:100791968 531.946