Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00237 ATGGGTGTCAATAGGTCTAGCTCCAAGTGCGCAACCGTTGGCATTCAAGGCATTGCTTGGGCCTTCGGTGGCATGATCTTCACTCTTGTTTACGGCACTGCTGGAATCTCTGGGGGACACATAAACCCATCTGTGACATTCGGGCTGTTCTTGGCGAGGAAATTGTCGTTGACCAGGGCACTGTTCTACATGGTGATGCAGGTGTTGGGTGCTATCGTTGGCGCTGGTGTGATCAAAGGTTTCGAGGGAAAAACCTTCTACGGCCAACACAACGGTGGTGCCAACTTTGTTGCCCCTGGTTACACCAAAGGTGATGGACTTGGTGCTGAGATTGTTGGCACCTTCATCCTTGTCTACACCGTTTTCTCAGCCACCGATGCCAAGCATAGCGCTAGAGACTCACACGTCCCTATTTTGGCACCCTTGCCAATTGGGTTCGTTGTGTTCTTGGTGCACTTGGCCACCATCCCAATCACTGGAACCGGTATCAACCCTGCTCGAAGTCTCGGTGCTGCCATCATCTTCAACAAAGACCTTGGCTGGGATGATCACTGGATCTTCTGGGTTGGACCTTTCGTTGGTGCAGCTCTTGCGGCTCTTTACCACCAAGTTGTAATCAGAGCCATTCCCTTCAAATCCAATTAA 645 0.5116 MGVNRSSSKCATVGIQGIAWAFGGMIFTLVYGTAGISGGHINPSVTFGLFLARKLSLTRALFYMVMQVLGAIVGAGVIKGFEGKTFYGQHNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKHSARDSHVPILAPLPIGFVVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHWIFWVGPFVGAALAALYHQVVIRAIPFKSN 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00237 214 NCBIfam MIP family channel protein 9 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo1g00237 214 Gene3D Glycerol uptake facilitator protein. 1 213 IPR023271 -
Pumo1g00237 214 ProSitePatterns MIP family signature. 40 48 IPR022357 -
Pumo1g00237 214 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 210 IPR034294 -
Pumo1g00237 214 CDD MIP 14 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo1g00237 214 FunFam Putative aquaporin PIP-type 7a 78 210 - -
Pumo1g00237 214 PRINTS Major intrinsic protein family signature 22 46 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo1g00237 214 PRINTS Major intrinsic protein family signature 109 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo1g00237 214 PRINTS Major intrinsic protein family signature 145 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo1g00237 214 PRINTS Major intrinsic protein family signature 59 78 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo1g00237 214 PRINTS Major intrinsic protein family signature 185 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo1g00237 214 SUPERFAMILY Aquaporin-like 6 207 IPR023271 -
Pumo1g00237 214 Pfam Major intrinsic protein 9 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00237 Pumo-Chr1 3635305 3636604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00237 1 214 Major Intrinsic Protein MIP AT4G23400 84.112 2.09e-127 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00237 K09872 - gmx:100791447 421.394