Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00236 ATGGCGGCGAGCGATCGCACAGTGTTGCAATTCTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGCAAAGCTTATCCGCGAAGGTCCACCCTCTGGTTATCTTCAACATCTGCGATTGCTACGTTCGACGCCCTGACCAAGCCGACCGCGTCATTGGAACCCTACTCGGCTCCGTCCTTCCCGACGGAACCGTCGATATCCGCAATTCCTATGCCGTTCCTCACAATGAGTCTATCGAACAGGTTGCATTGGATATAGAGTACCACCACAATATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTTGGATGGTATTCAACTGGCCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTTTTATTCTCGAGAAGTACCCAATCCCATACACTTGACTGTTGATACAGGATTTACAAATGGAGCAGGTACTATTAAAGCATACGTGTCTAACAATTTATCTCTTGGAGAACGGCAAATTGCTGCACAGTTCCAAGAAATTCCATTAGATCTTCGTATGGTGGAAGCTGAGCGATTTGGATTTGATATGCTGAAGGCAACCGCAGTTGACAAAATTCCCTCAGATTTAGAAGGGATGGAAGCATCAATGCAACATCTACTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTGGAAGGGCGAGTTGCACCAGACAACAAAATCGGGAGATATATATCAGATGCTGTAGGTTCCCTTCCCAAACTGTCTCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAGGATCACTTGCTTTTGCTGTATTTATCTAGCATCACAAGAACGCAGCTTAGCTTGGCTGAAAAATTGAACACAGCTGCTCAGATTCTGTGA 885 0.4384 MAASDRTVLQFSSSSSSSSSSSSSQSLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNESIEQVALDIEYHHNMLISHQKVNPKEIIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTNGAGTIKAYVSNNLSLGERQIAAQFQEIPLDLRMVEAERFGFDMLKATAVDKIPSDLEGMEASMQHLLVLIDDIYKYVDDVVEGRVAPDNKIGRYISDAVGSLPKLSPSVFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00236 294 Pfam Maintenance of mitochondrial structure and function 181 287 IPR024969 -
Pumo1g00236 294 CDD MPN_eIF3f 30 287 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pumo1g00236 294 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 17 291 - -
Pumo1g00236 294 FunFam Eukaryotic translation initiation factor 3 subunit F 14 195 - -
Pumo1g00236 294 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 27 290 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pumo1g00236 294 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 27 132 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pumo1g00236 294 MobiDBLite consensus disorder prediction 1 25 - -
Pumo1g00236 294 SMART pad1_6 28 159 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pumo1g00236 294 Gene3D Cytidine Deaminase, domain 2 15 195 - -
Pumo1g00236 294 ProSiteProfiles MPN domain profile. 29 160 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00236 Pumo-Chr1 3629320 3632348 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00236 2 294 Eukaryotic Initiation Factors Gene Family AT2G39990 76.451 1.96e-161 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00236 K03249 - gmx:100811797 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00236 1 3629320 3632348 Pumo1g00236 1 3629320 3632348 ECH