Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00235 ATGGAAGAGGGCTTGTCAGAGTTTTGTATTAGAGGTGCAAGTGTTGGTGGTAACAGTGGCAGTGCTACTGGCACCAAGTGTGGGCGTTGGAATCCCACTACTGAACAGGTTAAGGTTCTGACTGAACTGTTCAGTTCTGGACTCCGCACCCCAAGCACTGATCAGATTCAAAAGATCTCTAATCAGCTTAGTTTTTATGGTAAGATTGAGAGCAAGAACGTGTTCTATTGGTTTCAGAACCATAAGGCTAGGGAAAGACAAAAGCGTCGCAAGGTTGATAAGGATGTGATTCCTAGTGAAAACTCTATCTCCATCAATTCTTTTACACAAAATTTTACTCAGCTATATCAGGTTTCTGAGCCTCAGAGGGTGCTTGAGACTCTTCAACTATTCCCCTTGAACTCCTTTGGTGAATCAGAATCAAAGAATATGAGGGTCCATGCAAGTGAATGCAGGGATAACACTATGTTTTCATACACAGTTGGGGAACAAATGGATCATCCACCATTAGATCTTCGCTTGAGTTTTATGTGA 534 0.4232 MEEGLSEFCIRGASVGGNSGSATGTKCGRWNPTTEQVKVLTELFSSGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQKRRKVDKDVIPSENSISINSFTQNFTQLYQVSEPQRVLETLQLFPLNSFGESESKNMRVHASECRDNTMFSYTVGEQMDHPPLDLRLSFM 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00235 177 Gene3D - 26 93 - -
Pumo1g00235 177 CDD homeodomain 29 89 IPR001356 GO:0003677
Pumo1g00235 177 SMART HOX_1 25 92 IPR001356 GO:0003677
Pumo1g00235 177 Pfam Homeodomain 27 87 IPR001356 GO:0003677
Pumo1g00235 177 FunFam WUSCHEL-related homeobox 11 26 94 - -
Pumo1g00235 177 SUPERFAMILY Homeodomain-like 28 90 IPR009057 -
Pumo1g00235 177 ProSiteProfiles 'Homeobox' domain profile. 23 88 IPR001356 GO:0003677
Pumo1g00235 177 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 16 99 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00235 Pumo-Chr1 3623231 3624178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00235 8 177 Wox Gene Family AT3G11260 53.476 1.60e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pumo1g00235 Homeodomain 2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00235 - - gmx:100791433 332.798